SNP Report
Name | rs11585845   dbSNP |
---|---|
Location | chr:1,155944189 |
Allele | T/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10796955 | 1.00[CEU][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1111102 | 0.86[CEU][hapmap];0.81[TSI][hapmap] |
rs11264426 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.94[TSI][hapmap];0.86[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12037177 | 0.95[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap] |
rs12080846 | 0.93[ASN][1000 genomes] |
rs12091273 | 0.93[ASN][1000 genomes] |
rs12091361 | 0.93[ASN][1000 genomes] |
rs12118795 | 0.90[CEU][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes] |
rs12568523 | 0.95[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap] |
rs1889532 | 1.00[CEU][hapmap];0.80[GIH][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs1889533 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2016251 | 0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.92[ASN][1000 genomes] |
rs2282301 | 0.95[CEU][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap] |
rs2297649 | 0.95[CEU][hapmap];0.84[CHB][hapmap];0.92[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs2364403 | 0.95[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap];0.94[ASN][1000 genomes] |
rs4661175 | 0.93[ASW][hapmap] |
rs4661217 | 0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs4661218 | 0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs61813286 | 0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs6427297 | 0.81[CEU][hapmap];0.84[TSI][hapmap] |
rs6667652 | 0.95[CEU][hapmap];0.84[CHB][hapmap];0.80[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap] |
rs6670493 | 1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs6696019 | 0.95[CEU][hapmap];0.86[JPT][hapmap] |
rs729022 | 0.82[MEX][hapmap] |
rs7534858 | 0.93[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs867549 | 0.95[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap] |
rs867550 | 0.95[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap] |
rs915178 | 0.86[CEU][hapmap];0.84[TSI][hapmap] |
rs915181 | 0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.92[ASN][1000 genomes] |
rs928596 | 0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes] |
Symbol | Regulation type |
---|---|
ARHGEF2 | Proximal transcriptional regulation |
ENSG00000241471 | Distal transcriptional regulation |
SSR2 | Distal transcriptional regulation |
ARHGEF2 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014