SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 28)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10796955	0.86[CEU][hapmap];0.81[TSI][hapmap]
rs10908486	0.82[YRI][hapmap]
rs11264426	0.86[CEU][hapmap]
rs11486142	0.80[EUR][1000 genomes]
rs11585845	0.86[CEU][hapmap];0.81[TSI][hapmap]
rs12037177	0.81[CEU][hapmap]
rs12118795	0.95[CEU][hapmap];0.90[TSI][hapmap]
rs12568523	0.80[CEU][hapmap]
rs1475766	0.82[YRI][hapmap]
rs1889532	0.86[CEU][hapmap]
rs2016251	0.81[CEU][hapmap]
rs2282301	0.81[CEU][hapmap]
rs2297649	0.81[CEU][hapmap]
rs3820592	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4661218	0.86[CEU][hapmap];0.82[TSI][hapmap]
rs59781317	0.81[EUR][1000 genomes]
rs6427297	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6667652	0.81[CEU][hapmap]
rs6670493	0.85[CEU][hapmap]
rs6696019	0.81[CEU][hapmap]
rs72708238	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72708239	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7534858	0.86[CEU][hapmap];0.81[TSI][hapmap]
rs867549	0.81[CEU][hapmap]
rs867550	0.81[CEU][hapmap]
rs915178	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs915181	0.81[CEU][hapmap]
rs928596	0.86[CEU][hapmap];0.82[TSI][hapmap]

rSNP related genes

Symbol	Regulation type
SSR2	Proximal transcriptional regulation
KIAA0907	Distal transcriptional regulation
UBQLN4	Distal transcriptional regulation
LAMTOR2	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 7)