SNP Report
Basic Infomation
| Name | rs1889532 dbSNP |
|---|---|
| Location | chr:1,155951502 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 46)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10796955 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10908483 | 0.80[AMR][1000 genomes] |
| rs1111102 | 0.86[CEU][hapmap] |
| rs11264422 | 0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs11264426 | 1.00[CEU][hapmap];0.80[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11585845 | 1.00[CEU][hapmap];0.80[GIH][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs12026057 | 0.84[AMR][1000 genomes] |
| rs12037177 | 0.95[CEU][hapmap];0.85[MEX][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes] |
| rs12118795 | 0.90[CEU][hapmap];0.85[CHD][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs12144175 | 0.81[AMR][1000 genomes] |
| rs12568523 | 0.95[CEU][hapmap] |
| rs1749405 | 0.80[CHB][hapmap] |
| rs1889533 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2016251 | 0.95[CEU][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.93[AMR][1000 genomes] |
| rs2282301 | 0.95[CEU][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes] |
| rs2297649 | 0.95[CEU][hapmap];0.91[GIH][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs2364403 | 0.81[MEX][hapmap] |
| rs2993207 | 0.80[CHB][hapmap] |
| rs3820594 | 0.86[MEX][hapmap] |
| rs3856261 | 0.88[JPT][hapmap] |
| rs4661175 | 0.93[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs4661217 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4661218 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs488079 | 0.80[CHB][hapmap] |
| rs490498 | 0.93[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap] |
| rs539602 | 0.80[CHB][hapmap] |
| rs61813286 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs625658 | 0.80[CHB][hapmap] |
| rs6427297 | 0.81[CEU][hapmap] |
| rs66466805 | 0.82[AMR][1000 genomes] |
| rs6667652 | 0.95[CEU][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes] |
| rs6670477 | 0.80[AMR][1000 genomes] |
| rs6670493 | 1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6696019 | 0.95[CEU][hapmap];0.80[AMR][1000 genomes] |
| rs670523 | 0.93[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap] |
| rs72708205 | 0.81[AMR][1000 genomes] |
| rs7521292 | 0.81[AMR][1000 genomes] |
| rs7534858 | 1.00[CEU][hapmap];0.80[GIH][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7545308 | 0.80[AMR][1000 genomes] |
| rs822478 | 0.89[JPT][hapmap] |
| rs867548 | 0.82[AMR][1000 genomes] |
| rs867549 | 0.95[CEU][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes] |
| rs867550 | 0.95[CEU][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes] |
| rs915178 | 0.86[CEU][hapmap] |
| rs915181 | 0.95[CEU][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.92[AMR][1000 genomes] |
| rs928596 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ARHGEF2 | Proximal transcriptional regulation |
| SSR2 | Distal transcriptional regulation |
| ARHGEF2 | Distal transcriptional regulation |
| UBQLN4 | Distal transcriptional regulation |
| LAMTOR2 | Distal transcriptional regulation |
| KIAA0907 | Distal transcriptional regulation |
| RXFP4 | Distal transcriptional regulation |
| ARHGEF2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014