SNP Report

Basic Infomation

Name	rs539602 dbSNP
Location	chr:1,155899020
Allele	A/T

LD-proxy of rSNPs(r²>0.8) (count: 27)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10796955	0.80[CHB][hapmap]
rs11264422	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12024880	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12027412	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12563627	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1749405	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1749410	0.82[ASN][1000 genomes]
rs1889532	0.80[CHB][hapmap]
rs2993207	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4661151	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4661175	1.00[CEU][hapmap];0.87[CHB][hapmap];0.80[YRI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4661218	0.80[CHB][hapmap]
rs488079	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs490498	1.00[CEU][hapmap];0.87[CHB][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs625658	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs639398	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs656247	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs656737	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs670523	1.00[CEU][hapmap];0.87[CHB][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs729022	0.88[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.89[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7517204	0.82[ASN][1000 genomes]
rs7538214	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs822504	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs822505	0.84[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs822508	0.88[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs822509	0.82[ASN][1000 genomes]
rs928596	0.80[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
KIAA0907	Proximal transcriptional regulation
SCARNA4	Proximal transcriptional regulation
ARHGEF2	Distal transcriptional regulation
RXFP4	Distal transcriptional regulation
KIAA0907	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)