SNP Report
Basic Infomation
| Name | rs822508 dbSNP |
|---|---|
| Location | chr:1,155850558 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 29)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10908481 | 0.87[MEX][hapmap] |
| rs11264422 | 0.88[CEU][hapmap];0.81[CHB][hapmap] |
| rs12024880 | 0.82[ASN][1000 genomes] |
| rs12027412 | 0.82[ASN][1000 genomes] |
| rs12563627 | 0.88[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1749405 | 0.88[CEU][hapmap];0.94[CHB][hapmap];0.86[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.87[MKK][hapmap];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1749410 | 0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2993207 | 0.88[CEU][hapmap];0.94[CHB][hapmap];0.83[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.87[MKK][hapmap];0.88[ASN][1000 genomes] |
| rs3820594 | 0.80[JPT][hapmap];0.83[MEX][hapmap] |
| rs4661151 | 0.88[CEU][hapmap];0.93[CHB][hapmap];0.86[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.87[MKK][hapmap];0.82[ASN][1000 genomes] |
| rs4661175 | 0.88[CEU][hapmap];0.81[CHB][hapmap];0.91[MEX][hapmap] |
| rs488079 | 0.88[CEU][hapmap];0.94[CHB][hapmap];0.86[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.87[MKK][hapmap];0.82[ASN][1000 genomes] |
| rs490498 | 0.88[CEU][hapmap];0.81[CHB][hapmap];0.84[MEX][hapmap] |
| rs539602 | 0.88[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs625658 | 0.88[CEU][hapmap];0.94[CHB][hapmap];0.86[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.87[MKK][hapmap];0.82[ASN][1000 genomes] |
| rs656247 | 0.84[ASN][1000 genomes] |
| rs656737 | 0.85[ASN][1000 genomes] |
| rs670523 | 0.88[CEU][hapmap];0.81[CHB][hapmap];0.84[MEX][hapmap] |
| rs708611 | 0.82[CEU][hapmap];0.87[MKK][hapmap];0.89[TSI][hapmap] |
| rs729022 | 1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7517204 | 0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7538214 | 0.84[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7541060 | 0.81[CEU][hapmap] |
| rs821551 | 0.85[CEU][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap] |
| rs822490 | 0.85[CEU][hapmap];0.82[GIH][hapmap];0.80[JPT][hapmap];0.96[MEX][hapmap];0.87[MKK][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs822504 | 0.86[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs822505 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs822509 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs860295 | 0.85[CEU][hapmap];0.80[JPT][hapmap];0.96[MEX][hapmap];0.85[MKK][hapmap];0.92[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SYT11 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 10)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014