SNP Report
Name | rs3820594   dbSNP |
---|---|
Location | chr:1,155829511 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10796955 | 0.86[MEX][hapmap] |
rs10908479 | 0.92[CEU][hapmap];0.80[CHB][hapmap];0.82[JPT][hapmap] |
rs10908481 | 0.87[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap] |
rs12035524 | 0.80[CHB][hapmap];0.95[CHD][hapmap];0.82[JPT][hapmap];0.81[MKK][hapmap] |
rs12037177 | 0.81[MEX][hapmap] |
rs12563627 | 0.80[JPT][hapmap] |
rs12744132 | 0.86[CHB][hapmap];0.82[JPT][hapmap] |
rs1749405 | 0.80[JPT][hapmap] |
rs1889532 | 0.86[MEX][hapmap] |
rs2016251 | 0.91[MEX][hapmap] |
rs2282301 | 0.86[MEX][hapmap] |
rs2297649 | 0.91[MEX][hapmap] |
rs2993207 | 0.80[JPT][hapmap] |
rs348196 | 0.80[CHB][hapmap];0.95[CHD][hapmap];0.82[JPT][hapmap] |
rs3738590 | 0.92[CEU][hapmap];0.95[CHD][hapmap];0.82[JPT][hapmap];0.88[TSI][hapmap] |
rs475550 | 0.92[CEU][hapmap];0.95[CHD][hapmap];0.82[JPT][hapmap];0.88[TSI][hapmap] |
rs488079 | 0.80[JPT][hapmap] |
rs625658 | 0.80[JPT][hapmap] |
rs6427286 | 0.90[CHB][hapmap];0.82[JPT][hapmap] |
rs6667652 | 0.86[MEX][hapmap] |
rs670876 | 0.80[CHB][hapmap] |
rs678157 | 0.82[JPT][hapmap] |
rs708611 | 0.95[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap] |
rs729022 | 0.80[JPT][hapmap];0.82[MEX][hapmap] |
rs7528441 | 0.81[AMR][1000 genomes] |
rs7541060 | 0.95[CHB][hapmap];0.82[JPT][hapmap] |
rs7556519 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs821551 | 0.84[CHB][hapmap] |
rs822478 | 0.84[CHB][hapmap];0.90[JPT][hapmap] |
rs822490 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];1.00[ASN][1000 genomes] |
rs822494 | 0.98[ASN][1000 genomes] |
rs822505 | 0.80[JPT][hapmap] |
rs822508 | 0.80[JPT][hapmap];0.83[MEX][hapmap] |
rs860295 | 0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap] |
rs867549 | 0.86[MEX][hapmap] |
rs867550 | 0.86[MEX][hapmap] |
rs915181 | 0.86[MEX][hapmap] |
Symbol | Regulation type |
---|---|
GON4L | Proximal transcriptional regulation |
SYT11 | Proximal transcriptional regulation |
RIT1 | Distal transcriptional regulation |
UBQLN4 | Distal transcriptional regulation |
LAMTOR2 | Distal transcriptional regulation |
PMF1-BGLAP | Distal transcriptional regulation |
PMF1 | Distal transcriptional regulation |
ENSG00000201614 | Distal transcriptional regulation |
SYT11 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014