SNP Report
Name | rs10908481   dbSNP |
---|---|
Location | chr:1,155713650 |
Allele | T/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10908470 | 0.84[CEU][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap] |
rs10908471 | 0.84[CEU][hapmap];0.91[JPT][hapmap] |
rs10908479 | 0.88[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap] |
rs10908480 | 0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs10908482 | 1.00[ASN][1000 genomes] |
rs11264380 | 0.84[CEU][hapmap];0.91[JPT][hapmap];0.85[TSI][hapmap] |
rs11264381 | 0.84[CEU][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap] |
rs11264387 | 0.84[CEU][hapmap];0.85[TSI][hapmap] |
rs11264410 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs12024187 | 0.85[EUR][1000 genomes] |
rs12035524 | 0.85[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];0.80[ASN][1000 genomes] |
rs12047756 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
rs12744132 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes] |
rs1556488 | 0.84[CEU][hapmap];0.81[JPT][hapmap];0.85[TSI][hapmap] |
rs2048431 | 0.88[CEU][hapmap];0.85[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap] |
rs2175391 | 0.88[CEU][hapmap];0.85[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap] |
rs2282301 | 0.82[MEX][hapmap] |
rs2666826 | 1.00[JPT][hapmap] |
rs28662267 | 0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs2948071 | 0.86[ASN][1000 genomes] |
rs2948072 | 0.86[ASN][1000 genomes] |
rs2985707 | 0.89[ASN][1000 genomes] |
rs348196 | 0.85[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes] |
rs3738590 | 0.88[CEU][hapmap];0.84[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.82[ASN][1000 genomes] |
rs3820594 | 0.87[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap] |
rs3892792 | 0.84[CEU][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap] |
rs4278368 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs475550 | 0.88[CEU][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap] |
rs490608 | 0.95[ASN][1000 genomes] |
rs6427286 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
rs6427287 | 0.97[ASN][1000 genomes] |
rs644853 | 0.91[JPT][hapmap] |
rs6662953 | 0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs6665227 | 1.00[ASN][1000 genomes] |
rs6667652 | 0.82[MEX][hapmap] |
rs670876 | 0.85[CHB][hapmap] |
rs678157 | 1.00[JPT][hapmap] |
rs708611 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[ASN][1000 genomes] |
rs729022 | 0.87[MEX][hapmap] |
rs7521594 | 0.82[ASN][1000 genomes] |
rs7541060 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
rs7550402 | 0.97[ASN][1000 genomes] |
rs821551 | 0.90[CHB][hapmap];0.82[CHD][hapmap];0.91[JPT][hapmap] |
rs822025 | 0.86[ASN][1000 genomes] |
rs822478 | 0.90[CHB][hapmap];0.82[CHD][hapmap] |
rs822490 | 0.95[CHB][hapmap];0.97[CHD][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap] |
rs822508 | 0.87[MEX][hapmap] |
rs860295 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap];0.83[ASN][1000 genomes] |
rs867549 | 0.82[MEX][hapmap] |
rs867550 | 0.82[MEX][hapmap] |
rs9426933 | 0.96[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
MSTO2P | Proximal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014