SNP Report

Basic Infomation

Name	rs10908481 dbSNP
Location	chr:1,155713650
Allele	T/G

LD-proxy of rSNPs(r²>0.8) (count: 51)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10908470	0.84[CEU][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap]
rs10908471	0.84[CEU][hapmap];0.91[JPT][hapmap]
rs10908479	0.88[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10908480	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10908482	1.00[ASN][1000 genomes]
rs11264380	0.84[CEU][hapmap];0.91[JPT][hapmap];0.85[TSI][hapmap]
rs11264381	0.84[CEU][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap]
rs11264387	0.84[CEU][hapmap];0.85[TSI][hapmap]
rs11264410	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12024187	0.85[EUR][1000 genomes]
rs12035524	0.85[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];0.80[ASN][1000 genomes]
rs12047756	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12744132	0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1556488	0.84[CEU][hapmap];0.81[JPT][hapmap];0.85[TSI][hapmap]
rs2048431	0.88[CEU][hapmap];0.85[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs2175391	0.88[CEU][hapmap];0.85[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap]
rs2282301	0.82[MEX][hapmap]
rs2666826	1.00[JPT][hapmap]
rs28662267	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2948071	0.86[ASN][1000 genomes]
rs2948072	0.86[ASN][1000 genomes]
rs2985707	0.89[ASN][1000 genomes]
rs348196	0.85[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs3738590	0.88[CEU][hapmap];0.84[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.82[ASN][1000 genomes]
rs3820594	0.87[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs3892792	0.84[CEU][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap]
rs4278368	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs475550	0.88[CEU][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap]
rs490608	0.95[ASN][1000 genomes]
rs6427286	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6427287	0.97[ASN][1000 genomes]
rs644853	0.91[JPT][hapmap]
rs6662953	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6665227	1.00[ASN][1000 genomes]
rs6667652	0.82[MEX][hapmap]
rs670876	0.85[CHB][hapmap]
rs678157	1.00[JPT][hapmap]
rs708611	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[ASN][1000 genomes]
rs729022	0.87[MEX][hapmap]
rs7521594	0.82[ASN][1000 genomes]
rs7541060	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7550402	0.97[ASN][1000 genomes]
rs821551	0.90[CHB][hapmap];0.82[CHD][hapmap];0.91[JPT][hapmap]
rs822025	0.86[ASN][1000 genomes]
rs822478	0.90[CHB][hapmap];0.82[CHD][hapmap]
rs822490	0.95[CHB][hapmap];0.97[CHD][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap]
rs822508	0.87[MEX][hapmap]
rs860295	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap];0.83[ASN][1000 genomes]
rs867549	0.82[MEX][hapmap]
rs867550	0.82[MEX][hapmap]
rs9426933	0.96[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
MSTO2P	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 7)

eQTL related gene	Source
PRUNE	SCAN
YY1AP1	SCAN
RIT1	SCAN
SPRR3	SCAN
ROBLD3	SCAN
YY1AP1	SCAN
GPATCH4	SCAN