SNP Report
Basic Infomation
| Name | rs644853 dbSNP |
|---|---|
| Location | chr:1,155706217 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 34)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10752611 | 1.00[JPT][hapmap] |
| rs10908470 | 1.00[JPT][hapmap] |
| rs10908471 | 0.92[JPT][hapmap] |
| rs10908479 | 0.84[JPT][hapmap] |
| rs10908481 | 0.91[JPT][hapmap] |
| rs10908482 | 0.87[AFR][1000 genomes] |
| rs11264380 | 1.00[JPT][hapmap] |
| rs11264381 | 1.00[JPT][hapmap] |
| rs11264387 | 0.83[JPT][hapmap] |
| rs12035524 | 0.91[JPT][hapmap] |
| rs12047756 | 0.84[JPT][hapmap] |
| rs12143948 | 1.00[JPT][hapmap] |
| rs12744132 | 0.84[JPT][hapmap] |
| rs1556488 | 0.90[JPT][hapmap] |
| rs2048431 | 0.91[JPT][hapmap] |
| rs2175391 | 0.91[JPT][hapmap] |
| rs2666826 | 0.82[JPT][hapmap] |
| rs348196 | 0.91[JPT][hapmap] |
| rs3738590 | 0.91[JPT][hapmap] |
| rs3892792 | 0.92[JPT][hapmap] |
| rs475550 | 0.91[JPT][hapmap] |
| rs490608 | 0.87[AFR][1000 genomes] |
| rs6427286 | 0.84[JPT][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes] |
| rs6427287 | 0.88[AFR][1000 genomes] |
| rs6696888 | 1.00[JPT][hapmap] |
| rs678157 | 0.84[JPT][hapmap] |
| rs708611 | 0.87[YRI][hapmap] |
| rs7541060 | 0.84[JPT][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes] |
| rs7550402 | 0.87[AFR][1000 genomes] |
| rs821551 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs822478 | 0.84[CHB][hapmap];0.81[JPT][hapmap] |
| rs822490 | 0.93[YRI][hapmap] |
| rs860295 | 0.93[YRI][hapmap] |
| rs9426933 | 0.88[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DAP3 | Proximal transcriptional regulation |
| MSTO2P | RNA binding protein mediated regulation |
| MSTO1 | RNA binding protein mediated regulation |
| DAP3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014