SNP Report

Basic Infomation

Name	rs10908479 dbSNP
Location	chr:1,155643403
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 55)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10752611	0.96[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes]
rs10908469	0.92[CEU][hapmap];0.92[JPT][hapmap]
rs10908470	0.96[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes]
rs10908471	0.96[CEU][hapmap];0.92[JPT][hapmap];0.87[EUR][1000 genomes]
rs10908481	0.88[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11264380	0.96[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes]
rs11264381	0.96[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs11264386	0.90[EUR][1000 genomes]
rs11264387	0.96[CEU][hapmap];0.81[CHB][hapmap];0.91[EUR][1000 genomes]
rs11264393	0.93[EUR][1000 genomes]
rs12030596	0.86[EUR][1000 genomes]
rs12035524	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12047756	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12079134	0.92[CEU][hapmap];0.92[JPT][hapmap]
rs12093350	0.86[EUR][1000 genomes]
rs12143948	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs12740629	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12744132	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12746592	0.96[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs12758945	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1360554	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs1556488	0.96[CEU][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes]
rs2048431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2175391	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2666826	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs28662267	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34124416	0.94[EUR][1000 genomes]
rs34620961	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348186	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs348192	0.84[AMR][1000 genomes]
rs348196	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35615695	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs3738590	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3820594	0.92[CEU][hapmap];0.80[CHB][hapmap];0.82[JPT][hapmap]
rs3851912	0.94[EUR][1000 genomes]
rs3892792	0.96[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap];0.89[EUR][1000 genomes]
rs475550	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs490608	0.82[ASN][1000 genomes]
rs6427278	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6427286	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs644853	0.84[JPT][hapmap]
rs6672128	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6688636	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs6696888	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs670876	0.84[CEU][hapmap];0.91[CHB][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs678157	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs708611	0.85[CHB][hapmap]
rs71628674	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7411786	0.84[EUR][1000 genomes]
rs7521594	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7541060	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs821551	0.91[JPT][hapmap]
rs822490	0.80[CHB][hapmap];0.82[JPT][hapmap]
rs860295	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs9426933	0.81[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
YY1AP1	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)