SNP Report
Name | rs6427286   dbSNP |
---|---|
Location | chr:1,155723297 |
Allele | T/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10908470 | 0.91[JPT][hapmap] |
rs10908471 | 0.92[JPT][hapmap] |
rs10908479 | 0.91[CHB][hapmap];1.00[JPT][hapmap] |
rs10908480 | 0.83[ASN][1000 genomes] |
rs10908481 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
rs10908482 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs11264410 | 0.91[ASN][1000 genomes] |
rs12035524 | 0.90[CHB][hapmap];1.00[JPT][hapmap] |
rs12047756 | 0.91[CHB][hapmap];1.00[JPT][hapmap] |
rs12744132 | 0.95[CHB][hapmap];1.00[JPT][hapmap] |
rs1556488 | 0.81[JPT][hapmap] |
rs2048431 | 0.90[CHB][hapmap];1.00[JPT][hapmap] |
rs2175391 | 0.90[CHB][hapmap];1.00[JPT][hapmap] |
rs2666826 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap] |
rs28662267 | 0.90[ASN][1000 genomes] |
rs2948071 | 0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs2948072 | 0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs2985707 | 0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs348196 | 0.90[CHB][hapmap];1.00[JPT][hapmap] |
rs3738590 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes] |
rs3820594 | 0.90[CHB][hapmap];0.82[JPT][hapmap] |
rs3892792 | 0.92[JPT][hapmap] |
rs4278368 | 0.97[ASN][1000 genomes] |
rs475550 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
rs490608 | 0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6427287 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs644853 | 0.84[JPT][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes] |
rs6662953 | 0.86[ASN][1000 genomes] |
rs6665227 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs670876 | 0.91[CHB][hapmap] |
rs678157 | 0.86[CHB][hapmap];1.00[JPT][hapmap] |
rs708611 | 0.95[CHB][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7521594 | 0.80[ASN][1000 genomes] |
rs7541060 | 0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7550402 | 0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs821551 | 0.85[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs822025 | 0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs822478 | 0.85[CHB][hapmap] |
rs822490 | 0.90[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap] |
rs860295 | 0.95[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs9426933 | 0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
GON4L | Proximal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014