SNP Report
Basic Infomation
| Name | rs6662953 dbSNP |
|---|---|
| Location | chr:1,155754448 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10796954 | 0.81[ASN][1000 genomes] |
| rs10908480 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs10908481 | 0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs10908482 | 0.84[ASN][1000 genomes] |
| rs11264410 | 0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12024187 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs28662267 | 0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs2948071 | 0.91[ASN][1000 genomes] |
| rs2948072 | 0.92[ASN][1000 genomes] |
| rs2985707 | 0.95[ASN][1000 genomes] |
| rs4278368 | 0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6427286 | 0.86[ASN][1000 genomes] |
| rs6427287 | 0.86[ASN][1000 genomes] |
| rs6665227 | 0.84[ASN][1000 genomes] |
| rs708611 | 0.91[ASN][1000 genomes] |
| rs7541060 | 0.86[ASN][1000 genomes] |
| rs7550402 | 0.86[ASN][1000 genomes] |
| rs822025 | 0.92[ASN][1000 genomes] |
| rs860295 | 0.95[ASN][1000 genomes] |
| rs9426933 | 0.80[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| GON4L | Proximal transcriptional regulation |
| GON4L | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014