SNP Report

Basic Infomation

Name	rs708611 dbSNP
Location	chr:1,155743310
Allele	A/C

LD-proxy of rSNPs(r²>0.8) (count: 36)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10908479	0.85[CHB][hapmap]
rs10908481	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[ASN][1000 genomes]
rs10908482	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11264410	0.96[ASN][1000 genomes]
rs12035524	0.85[CHB][hapmap];0.97[CHD][hapmap]
rs12047756	0.85[CHB][hapmap]
rs12744132	0.90[CHB][hapmap]
rs2048431	0.85[CHB][hapmap];0.97[CHD][hapmap]
rs2175391	0.85[CHB][hapmap];0.97[CHD][hapmap]
rs28662267	0.85[ASN][1000 genomes]
rs2948071	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2948072	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2985707	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs348196	0.85[CHB][hapmap];0.97[CHD][hapmap]
rs3738590	0.84[CHB][hapmap];0.97[CHD][hapmap]
rs3820594	0.95[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap]
rs4278368	0.93[ASN][1000 genomes]
rs475550	0.97[CHD][hapmap]
rs490608	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6427286	0.95[CHB][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6427287	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs644853	0.87[YRI][hapmap]
rs6662953	0.91[ASN][1000 genomes]
rs6665227	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs670876	0.85[CHB][hapmap]
rs729022	0.82[CEU][hapmap];0.89[TSI][hapmap]
rs7541060	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7550402	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs821551	0.96[CEU][hapmap];0.90[CHB][hapmap];0.84[CHD][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs822025	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs822478	0.90[CHB][hapmap];0.84[CHD][hapmap]
rs822490	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.93[YRI][hapmap]
rs822505	0.82[CEU][hapmap]
rs822508	0.82[CEU][hapmap];0.87[MKK][hapmap];0.89[TSI][hapmap]
rs860295	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9426933	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
GON4L	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 2)

eQTL related gene	Source
AP1M2	SCAN
TRPC5	SCAN