SNP Report

Basic Infomation

Name	rs822505 dbSNP
Location	chr:1,155846528
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 28)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11264422	0.84[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap]
rs12024880	0.82[ASN][1000 genomes]
rs12027412	0.82[ASN][1000 genomes]
rs12563627	0.87[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1749405	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1749410	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2993207	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs3820594	0.80[JPT][hapmap]
rs4661151	0.87[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4661175	0.87[CEU][hapmap];0.81[CHB][hapmap]
rs488079	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs490498	0.87[CEU][hapmap];0.81[CHB][hapmap]
rs539602	0.84[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs625658	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs656247	0.84[ASN][1000 genomes]
rs656737	0.85[ASN][1000 genomes]
rs670523	0.87[CEU][hapmap];0.81[CHB][hapmap]
rs708611	0.82[CEU][hapmap]
rs729022	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7517204	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7538214	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7541060	0.81[CEU][hapmap]
rs821551	0.84[CEU][hapmap]
rs822490	0.84[CEU][hapmap];0.80[JPT][hapmap];0.83[EUR][1000 genomes]
rs822504	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs822508	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs822509	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs860295	0.84[CEU][hapmap];0.80[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
SYT11	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)