SNP Report
Basic Infomation
| Name | rs670523 dbSNP |
|---|---|
| Location | chr:1,155878732 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10796955 | 0.93[CHB][hapmap];1.00[JPT][hapmap] |
| rs11264422 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12024880 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs12027412 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs12563627 | 1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[GIH][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1749405 | 1.00[CEU][hapmap];0.87[CHB][hapmap];0.82[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1889532 | 0.93[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap] |
| rs2993207 | 1.00[CEU][hapmap];0.87[CHB][hapmap];0.80[GIH][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs3856261 | 0.88[JPT][hapmap] |
| rs4661151 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.80[GIH][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs4661175 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.90[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4661218 | 0.93[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap] |
| rs488079 | 1.00[CEU][hapmap];0.87[CHB][hapmap];0.80[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs490498 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs539602 | 1.00[CEU][hapmap];0.87[CHB][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs625658 | 1.00[CEU][hapmap];0.87[CHB][hapmap];0.80[GIH][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs639398 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs656247 | 0.94[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs656737 | 0.89[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs729022 | 0.88[CEU][hapmap];0.83[MEX][hapmap] |
| rs7538214 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs821551 | 1.00[ASW][hapmap];1.00[LWK][hapmap];0.83[MEX][hapmap];0.97[MKK][hapmap] |
| rs822478 | 1.00[ASW][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap] |
| rs822504 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs822505 | 0.87[CEU][hapmap];0.81[CHB][hapmap] |
| rs822508 | 0.88[CEU][hapmap];0.81[CHB][hapmap];0.84[MEX][hapmap] |
| rs928596 | 0.93[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| GON4L | Distal transcriptional regulation |
| SYT11 | Distal transcriptional regulation |
| KIAA0907 | Distal transcriptional regulation |
| RIT1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014