SNP Report
Basic Infomation
| Name | rs729022 dbSNP |
|---|---|
| Location | chr:1,155852123 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 39)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10908481 | 0.87[MEX][hapmap] |
| rs11264422 | 0.88[CEU][hapmap] |
| rs11264426 | 0.82[MEX][hapmap] |
| rs11585845 | 0.82[MEX][hapmap] |
| rs12024880 | 0.86[AFR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12027412 | 0.86[AFR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12563627 | 1.00[ASW][hapmap];0.88[CEU][hapmap];0.94[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.87[MEX][hapmap];0.85[MKK][hapmap];0.88[YRI][hapmap];0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1749405 | 1.00[ASW][hapmap];0.88[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1749410 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2282301 | 0.83[MEX][hapmap] |
| rs2993207 | 1.00[ASW][hapmap];0.88[CEU][hapmap];0.87[CHB][hapmap];0.83[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];0.93[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs3820594 | 0.80[JPT][hapmap];0.82[MEX][hapmap] |
| rs4661151 | 1.00[ASW][hapmap];0.88[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];0.89[AFR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4661175 | 0.85[ASW][hapmap];0.88[CEU][hapmap];0.91[MEX][hapmap];0.92[MKK][hapmap] |
| rs4661218 | 0.82[MEX][hapmap] |
| rs488079 | 1.00[ASW][hapmap];0.88[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];0.89[AFR][1000 genomes];0.81[ASN][1000 genomes] |
| rs490498 | 0.88[CEU][hapmap];0.83[MEX][hapmap] |
| rs539602 | 0.88[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.89[AFR][1000 genomes];0.81[ASN][1000 genomes] |
| rs625658 | 1.00[ASW][hapmap];0.88[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];0.89[AFR][1000 genomes];0.81[ASN][1000 genomes] |
| rs656247 | 0.91[AFR][1000 genomes];0.83[ASN][1000 genomes] |
| rs656737 | 0.84[ASN][1000 genomes] |
| rs6667652 | 0.83[MEX][hapmap] |
| rs670523 | 0.88[CEU][hapmap];0.83[MEX][hapmap] |
| rs708611 | 0.82[CEU][hapmap];0.89[TSI][hapmap] |
| rs7517204 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7534858 | 0.82[MEX][hapmap] |
| rs7538214 | 0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7541060 | 0.81[CEU][hapmap] |
| rs821551 | 0.85[CEU][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap] |
| rs822490 | 0.85[CEU][hapmap];0.82[GIH][hapmap];0.80[JPT][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes] |
| rs822504 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs822505 | 1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs822508 | 1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs822509 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs860295 | 0.85[CEU][hapmap];0.80[JPT][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap] |
| rs867549 | 0.83[MEX][hapmap] |
| rs867550 | 0.83[MEX][hapmap] |
| rs915181 | 0.83[MEX][hapmap] |
| rs928596 | 0.82[MEX][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SYT11 | Proximal transcriptional regulation |
| RIT1 | Distal transcriptional regulation |
| SYT11 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014