SNP Report
Name | rs1889533   dbSNP |
---|---|
Location | chr:1,155947930 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10796955 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs10908483 | 0.80[AMR][1000 genomes] |
rs11264422 | 0.83[ASN][1000 genomes] |
rs11264426 | 0.84[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs11585845 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12026057 | 0.84[AMR][1000 genomes] |
rs12037177 | 0.82[AMR][1000 genomes] |
rs12118795 | 0.81[EUR][1000 genomes] |
rs12144175 | 0.81[AMR][1000 genomes] |
rs1889532 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2016251 | 0.93[AMR][1000 genomes] |
rs2282301 | 0.82[AMR][1000 genomes] |
rs2297649 | 0.98[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs4661175 | 0.86[ASN][1000 genomes] |
rs4661217 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs4661218 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs61813286 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs66466805 | 0.82[AMR][1000 genomes] |
rs6667652 | 0.83[AMR][1000 genomes] |
rs6670477 | 0.80[AMR][1000 genomes] |
rs6670493 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6696019 | 0.80[AMR][1000 genomes] |
rs72708205 | 0.81[AMR][1000 genomes] |
rs7521292 | 0.81[AMR][1000 genomes] |
rs7534858 | 0.85[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs7545308 | 0.80[AMR][1000 genomes] |
rs867548 | 0.82[AMR][1000 genomes] |
rs867549 | 0.82[AMR][1000 genomes] |
rs867550 | 0.82[AMR][1000 genomes] |
rs915181 | 0.92[AMR][1000 genomes] |
rs928596 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
ARHGEF2 | Proximal transcriptional regulation |
WDR74 | Distal transcriptional regulation |
ING3 | Distal transcriptional regulation |
KIAA0907 | Distal transcriptional regulation |
UBQLN4 | Distal transcriptional regulation |
LAMTOR2 | Distal transcriptional regulation |
ENSG00000227010 | Distal transcriptional regulation |
SSR2 | Distal transcriptional regulation |
RIT1 | Distal transcriptional regulation |
ARHGEF2 | Distal transcriptional regulation |
ENSG00000224276 | Distal transcriptional regulation |
RXFP4 | Distal transcriptional regulation |
LMNA | Distal transcriptional regulation |
ARHGEF2 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014