SNP Report
Basic Infomation
| Name | rs1889533 dbSNP |
|---|---|
| Location | chr:1,155947930 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 31)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10796955 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10908483 | 0.80[AMR][1000 genomes] |
| rs11264422 | 0.83[ASN][1000 genomes] |
| rs11264426 | 0.84[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs11585845 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12026057 | 0.84[AMR][1000 genomes] |
| rs12037177 | 0.82[AMR][1000 genomes] |
| rs12118795 | 0.81[EUR][1000 genomes] |
| rs12144175 | 0.81[AMR][1000 genomes] |
| rs1889532 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2016251 | 0.93[AMR][1000 genomes] |
| rs2282301 | 0.82[AMR][1000 genomes] |
| rs2297649 | 0.98[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs4661175 | 0.86[ASN][1000 genomes] |
| rs4661217 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4661218 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs61813286 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs66466805 | 0.82[AMR][1000 genomes] |
| rs6667652 | 0.83[AMR][1000 genomes] |
| rs6670477 | 0.80[AMR][1000 genomes] |
| rs6670493 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6696019 | 0.80[AMR][1000 genomes] |
| rs72708205 | 0.81[AMR][1000 genomes] |
| rs7521292 | 0.81[AMR][1000 genomes] |
| rs7534858 | 0.85[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7545308 | 0.80[AMR][1000 genomes] |
| rs867548 | 0.82[AMR][1000 genomes] |
| rs867549 | 0.82[AMR][1000 genomes] |
| rs867550 | 0.82[AMR][1000 genomes] |
| rs915181 | 0.92[AMR][1000 genomes] |
| rs928596 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ARHGEF2 | Proximal transcriptional regulation |
| WDR74 | Distal transcriptional regulation |
| ING3 | Distal transcriptional regulation |
| KIAA0907 | Distal transcriptional regulation |
| UBQLN4 | Distal transcriptional regulation |
| LAMTOR2 | Distal transcriptional regulation |
| ENSG00000227010 | Distal transcriptional regulation |
| SSR2 | Distal transcriptional regulation |
| RIT1 | Distal transcriptional regulation |
| ARHGEF2 | Distal transcriptional regulation |
| ENSG00000224276 | Distal transcriptional regulation |
| RXFP4 | Distal transcriptional regulation |
| LMNA | Distal transcriptional regulation |
| ARHGEF2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014