SNP Report
Basic Infomation
| Name | rs915178 dbSNP |
|---|---|
| Location | chr:1,155978725 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10796955 | 0.86[CEU][hapmap];0.84[TSI][hapmap] |
| rs1111102 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11264426 | 0.86[CEU][hapmap] |
| rs11486142 | 0.83[AMR][1000 genomes] |
| rs11585845 | 0.86[CEU][hapmap];0.84[TSI][hapmap] |
| rs12037177 | 0.81[CEU][hapmap];0.81[TSI][hapmap] |
| rs12118795 | 0.95[CEU][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap] |
| rs12568523 | 0.80[CEU][hapmap] |
| rs1889532 | 0.86[CEU][hapmap] |
| rs2016251 | 0.81[CEU][hapmap] |
| rs2282301 | 0.81[CEU][hapmap];0.81[TSI][hapmap] |
| rs2297649 | 0.81[CEU][hapmap];0.81[TSI][hapmap] |
| rs3820592 | 0.92[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs4661218 | 0.86[CEU][hapmap] |
| rs59781317 | 0.85[AMR][1000 genomes] |
| rs6427297 | 1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6667652 | 0.81[CEU][hapmap];0.81[TSI][hapmap] |
| rs6670493 | 0.85[CEU][hapmap] |
| rs6696019 | 0.81[CEU][hapmap] |
| rs72708238 | 0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs72708239 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7534858 | 0.86[CEU][hapmap];0.84[TSI][hapmap] |
| rs867549 | 0.81[CEU][hapmap] |
| rs867550 | 0.81[CEU][hapmap] |
| rs915181 | 0.81[CEU][hapmap] |
| rs928596 | 0.86[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000241471 | Proximal transcriptional regulation |
| ARHGEF2 | Distal transcriptional regulation |
| UBQLN4 | Distal transcriptional regulation |
| LAMTOR2 | Distal transcriptional regulation |
| SSR2 | Distal transcriptional regulation |
| RAB25 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014