SNP Report
Basic Infomation
| Name | rs4629 dbSNP |
|---|---|
| Location | chr:20,44452697 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 63)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11906429 | 0.85[CEU][hapmap];0.97[GIH][hapmap] |
| rs12624645 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs12625621 | 0.85[CEU][hapmap];0.97[GIH][hapmap] |
| rs13037551 | 0.96[ASN][1000 genomes] |
| rs1967656 | 0.84[CEU][hapmap];0.84[GIH][hapmap] |
| rs2064504 | 0.82[CHB][hapmap] |
| rs232259 | 0.93[GIH][hapmap] |
| rs232262 | 0.85[GIH][hapmap] |
| rs232291 | 0.85[GIH][hapmap] |
| rs2425748 | 0.91[YRI][hapmap] |
| rs2664529 | 0.82[CHB][hapmap] |
| rs2868359 | 0.84[CEU][hapmap] |
| rs2868362 | 0.84[GIH][hapmap] |
| rs370237 | 0.82[CHB][hapmap];0.80[CHD][hapmap] |
| rs373018 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3746493 | 0.82[CHB][hapmap] |
| rs3746494 | 0.82[CHB][hapmap] |
| rs3746497 | 0.84[GIH][hapmap] |
| rs378710 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs380397 | 0.82[CHB][hapmap];0.80[CHD][hapmap] |
| rs380973 | 0.86[CHB][hapmap];0.91[CHD][hapmap] |
| rs383112 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs3848711 | 0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs386155 | 0.82[CHB][hapmap];0.80[CHD][hapmap] |
| rs390386 | 0.91[CHB][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs399672 | 0.82[CHB][hapmap] |
| rs411945 | 0.82[CHB][hapmap] |
| rs437122 | 0.82[CHB][hapmap];0.80[CHD][hapmap] |
| rs445503 | 0.91[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4638862 | 0.96[CEU][hapmap];0.95[GIH][hapmap] |
| rs464318 | 0.93[GIH][hapmap] |
| rs558554 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs567348 | 0.82[CHB][hapmap] |
| rs6032449 | 0.83[GIH][hapmap] |
| rs6032530 | 0.82[CHB][hapmap] |
| rs6032531 | 0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs6032532 | 0.82[CHB][hapmap] |
| rs6032533 | 0.88[CEU][hapmap] |
| rs6032537 | 0.82[CHB][hapmap] |
| rs6032538 | 0.82[CHB][hapmap] |
| rs6032541 | 0.91[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs6032544 | 0.81[CHB][hapmap] |
| rs6032545 | 0.91[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs6073905 | 0.82[CHB][hapmap] |
| rs6073910 | 0.82[CHB][hapmap] |
| rs6073912 | 0.85[CEU][hapmap] |
| rs6094224 | 0.80[GIH][hapmap] |
| rs6104350 | 0.95[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs6104355 | 0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6104374 | 0.90[CEU][hapmap] |
| rs6124741 | 0.91[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap] |
| rs6124746 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs6130930 | 0.88[CEU][hapmap] |
| rs6130941 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs6130942 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs6130958 | 0.84[CEU][hapmap] |
| rs6130959 | 0.84[CEU][hapmap] |
| rs722669 | 0.84[CEU][hapmap];0.84[GIH][hapmap] |
| rs7263437 | 0.85[CEU][hapmap];0.97[GIH][hapmap] |
| rs7268221 | 0.84[GIH][hapmap] |
| rs811657 | 0.96[ASN][1000 genomes] |
| rs8860 | 0.86[CHB][hapmap];0.91[CHD][hapmap] |
| rs910396 | 0.88[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NEURL2 | Distal transcriptional regulation |
| CTSA | Distal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| ACOT8 | Distal transcriptional regulation |
| ZSWIM3 | Distal transcriptional regulation |
| TNNC2 | Distal transcriptional regulation |
| SNX21 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 11)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014