SNP Report

Basic Infomation

Name	rs6032544 dbSNP
Location	chr:20,44422373
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 59)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs174745	0.85[CHB][hapmap]
rs197669	0.85[CHB][hapmap]
rs197671	0.85[CHB][hapmap]
rs2064504	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MKK][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2077004	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2138546	0.90[ASN][1000 genomes]
rs2664529	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MKK][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2664539	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2664591	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2742654	0.86[ASN][1000 genomes]
rs2868349	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs368622	1.00[ASN][1000 genomes]
rs370237	1.00[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs373018	0.81[CHB][hapmap]
rs3746493	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3746494	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs377770	0.96[ASN][1000 genomes]
rs379059	0.89[ASN][1000 genomes]
rs380397	1.00[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs380973	0.95[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs3848711	0.81[CHB][hapmap]
rs386155	1.00[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs390386	0.95[CEU][hapmap];0.81[CHB][hapmap];0.81[CHD][hapmap];0.92[EUR][1000 genomes]
rs399672	1.00[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs411945	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs426384	0.81[CEU][hapmap];0.90[CHB][hapmap];0.88[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4337538	0.88[ASN][1000 genomes]
rs437122	1.00[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4625980	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4629	0.81[CHB][hapmap]
rs567348	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6017692	0.99[ASN][1000 genomes]
rs6032473	0.86[CEU][hapmap]
rs6032524	0.96[ASN][1000 genomes]
rs6032530	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6032531	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6032532	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6032534	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6032535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6032536	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6032537	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6032538	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6032541	0.95[CEU][hapmap];0.81[CHB][hapmap];0.83[CHD][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6032545	0.95[CEU][hapmap];0.81[CHB][hapmap];0.83[CHD][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6032548	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6065886	0.92[EUR][1000 genomes]
rs6065892	0.85[ASN][1000 genomes]
rs6065893	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6073905	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MKK][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6073906	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6073910	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6104345	0.83[ASN][1000 genomes]
rs6104349	0.91[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6104350	0.95[CEU][hapmap];0.85[CHB][hapmap];0.83[CHD][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6104355	0.81[CHB][hapmap]
rs6124741	0.95[CEU][hapmap];0.81[CHB][hapmap];0.83[CHD][hapmap];0.91[EUR][1000 genomes]
rs6124742	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8116061	0.86[ASN][1000 genomes]
rs8860	0.95[CHB][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
DNTTIP1	Proximal transcriptional regulation
WFDC3	Proximal transcriptional regulation
WFDC3	Distal transcriptional regulation
NCOA5	Distal transcriptional regulation
ZNF335	Distal transcriptional regulation
PCIF1	Distal transcriptional regulation
NEURL2	Distal transcriptional regulation
CTSA	Distal transcriptional regulation
DNTTIP1	Distal transcriptional regulation
UBE2C	Distal transcriptional regulation
DNTTIP1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)