SNP Report
Name | rs2664539   dbSNP |
---|---|
Location | chr:20,44420637 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs13037551 | 0.83[ASN][1000 genomes] |
rs2064504 | 0.91[EUR][1000 genomes] |
rs2664529 | 0.91[EUR][1000 genomes] |
rs2868349 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs3746493 | 0.96[EUR][1000 genomes] |
rs3746494 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs3848711 | 0.83[ASN][1000 genomes] |
rs390386 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs445503 | 0.83[ASN][1000 genomes] |
rs4625980 | 0.92[EUR][1000 genomes] |
rs6032530 | 0.89[EUR][1000 genomes] |
rs6032531 | 0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6032532 | 0.95[EUR][1000 genomes] |
rs6032534 | 0.95[EUR][1000 genomes] |
rs6032535 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs6032541 | 0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6032544 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs6032545 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6032548 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs6065886 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs6065893 | 0.96[EUR][1000 genomes] |
rs6073905 | 0.90[EUR][1000 genomes] |
rs6073906 | 0.91[EUR][1000 genomes] |
rs6104350 | 0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6104355 | 0.83[ASN][1000 genomes] |
rs6124741 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6124742 | 0.89[EUR][1000 genomes] |
rs6130929 | 0.91[ASN][1000 genomes] |
rs811657 | 0.83[ASN][1000 genomes] |
rs910396 | 0.88[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
DNTTIP1 | Proximal transcriptional regulation |
WFDC3 | Proximal transcriptional regulation |
ENSG00000258017 | Distal transcriptional regulation |
TUBA1B | Distal transcriptional regulation |
ENSG00000221046 | Distal transcriptional regulation |
PLTP | Distal transcriptional regulation |
SLC12A5 | Distal transcriptional regulation |
ENSG00000204044 | Distal transcriptional regulation |
ENSG00000240742 | Distal transcriptional regulation |
WFDC3 | Distal transcriptional regulation |
TNNC2 | Distal transcriptional regulation |
SNX21 | Distal transcriptional regulation |
ZNF335 | Distal transcriptional regulation |
NCOA5 | Distal transcriptional regulation |
PCIF1 | Distal transcriptional regulation |
UBE2C | Distal transcriptional regulation |
NEURL2 | Distal transcriptional regulation |
CTSA | Distal transcriptional regulation |
DNTTIP1 | Distal transcriptional regulation |
DNTTIP1 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014