SNP Report
Basic Infomation
| Name | rs3746493 dbSNP |
|---|---|
| Location | chr:20,44418564 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 71)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1386504 | 0.84[CEU][hapmap] |
| rs1386505 | 0.81[CEU][hapmap] |
| rs1487317 | 0.84[CEU][hapmap] |
| rs174745 | 0.86[CHB][hapmap] |
| rs197669 | 0.86[CHB][hapmap] |
| rs197671 | 0.86[CHB][hapmap] |
| rs2064504 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2077004 | 0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2138546 | 0.89[ASN][1000 genomes] |
| rs232286 | 0.81[CEU][hapmap] |
| rs2664529 | 0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.97[TSI][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2664539 | 0.96[EUR][1000 genomes] |
| rs2664591 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2742654 | 0.85[ASN][1000 genomes] |
| rs2868349 | 0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs368622 | 0.99[ASN][1000 genomes] |
| rs370237 | 1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs373018 | 0.82[CHB][hapmap] |
| rs3746494 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs376206 | 0.84[CEU][hapmap] |
| rs377770 | 0.82[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs379059 | 0.88[ASN][1000 genomes] |
| rs380397 | 1.00[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs380421 | 0.84[CEU][hapmap] |
| rs380973 | 0.95[CHB][hapmap];0.83[CHD][hapmap];0.80[GIH][hapmap];0.94[JPT][hapmap];0.84[LWK][hapmap];0.84[ASN][1000 genomes] |
| rs3848711 | 0.82[CHB][hapmap] |
| rs386155 | 1.00[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs390386 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[CHD][hapmap];0.80[MEX][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes] |
| rs399672 | 1.00[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.92[MEX][hapmap];0.99[ASN][1000 genomes] |
| rs411945 | 0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs426384 | 0.83[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.84[ASN][1000 genomes] |
| rs4337538 | 0.86[ASN][1000 genomes] |
| rs437122 | 1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs454402 | 0.83[CEU][hapmap] |
| rs456212 | 0.83[CEU][hapmap] |
| rs459955 | 0.84[CEU][hapmap] |
| rs462145 | 0.84[CEU][hapmap] |
| rs4625980 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4629 | 0.82[CHB][hapmap] |
| rs567348 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.92[MEX][hapmap];0.83[MKK][hapmap];1.00[ASN][1000 genomes] |
| rs6017667 | 0.84[CEU][hapmap] |
| rs6017692 | 0.87[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6032471 | 0.82[CEU][hapmap] |
| rs6032473 | 0.91[CEU][hapmap] |
| rs6032474 | 0.84[CEU][hapmap] |
| rs6032524 | 0.98[ASN][1000 genomes] |
| rs6032530 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6032531 | 1.00[CEU][hapmap];0.98[EUR][1000 genomes] |
| rs6032532 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6032534 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6032535 | 0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6032536 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6032537 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.92[MEX][hapmap];0.90[MKK][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6032538 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6032541 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.80[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6032544 | 0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6032545 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.80[MEX][hapmap];0.97[TSI][hapmap];0.98[EUR][1000 genomes] |
| rs6032548 | 0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6065886 | 0.92[EUR][1000 genomes] |
| rs6065892 | 0.85[AFR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6065893 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6073905 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6073906 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6073910 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6104345 | 0.85[ASN][1000 genomes] |
| rs6104350 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];0.80[MEX][hapmap];0.97[TSI][hapmap];0.98[EUR][1000 genomes] |
| rs6104355 | 0.82[CHB][hapmap];0.80[CHD][hapmap] |
| rs6124741 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.80[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs6124742 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs8116061 | 0.85[ASN][1000 genomes] |
| rs8860 | 0.95[CHB][hapmap];0.83[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DNTTIP1 | Proximal transcriptional regulation |
| PLTP | Distal transcriptional regulation |
| WFDC3 | Distal transcriptional regulation |
| DNTTIP1 | Distal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014