SNP Report
Name | rs3746493   dbSNP |
---|---|
Location | chr:20,44418564 |
Allele | A/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1386504 | 0.84[CEU][hapmap] |
rs1386505 | 0.81[CEU][hapmap] |
rs1487317 | 0.84[CEU][hapmap] |
rs174745 | 0.86[CHB][hapmap] |
rs197669 | 0.86[CHB][hapmap] |
rs197671 | 0.86[CHB][hapmap] |
rs2064504 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2077004 | 0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2138546 | 0.89[ASN][1000 genomes] |
rs232286 | 0.81[CEU][hapmap] |
rs2664529 | 0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.97[TSI][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2664539 | 0.96[EUR][1000 genomes] |
rs2664591 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2742654 | 0.85[ASN][1000 genomes] |
rs2868349 | 0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs368622 | 0.99[ASN][1000 genomes] |
rs370237 | 1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs373018 | 0.82[CHB][hapmap] |
rs3746494 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs376206 | 0.84[CEU][hapmap] |
rs377770 | 0.82[AFR][1000 genomes];0.98[ASN][1000 genomes] |
rs379059 | 0.88[ASN][1000 genomes] |
rs380397 | 1.00[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes] |
rs380421 | 0.84[CEU][hapmap] |
rs380973 | 0.95[CHB][hapmap];0.83[CHD][hapmap];0.80[GIH][hapmap];0.94[JPT][hapmap];0.84[LWK][hapmap];0.84[ASN][1000 genomes] |
rs3848711 | 0.82[CHB][hapmap] |
rs386155 | 1.00[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes] |
rs390386 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[CHD][hapmap];0.80[MEX][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes] |
rs399672 | 1.00[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.92[MEX][hapmap];0.99[ASN][1000 genomes] |
rs411945 | 0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs426384 | 0.83[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.84[ASN][1000 genomes] |
rs4337538 | 0.86[ASN][1000 genomes] |
rs437122 | 1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs454402 | 0.83[CEU][hapmap] |
rs456212 | 0.83[CEU][hapmap] |
rs459955 | 0.84[CEU][hapmap] |
rs462145 | 0.84[CEU][hapmap] |
rs4625980 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs4629 | 0.82[CHB][hapmap] |
rs567348 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.92[MEX][hapmap];0.83[MKK][hapmap];1.00[ASN][1000 genomes] |
rs6017667 | 0.84[CEU][hapmap] |
rs6017692 | 0.87[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs6032471 | 0.82[CEU][hapmap] |
rs6032473 | 0.91[CEU][hapmap] |
rs6032474 | 0.84[CEU][hapmap] |
rs6032524 | 0.98[ASN][1000 genomes] |
rs6032530 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6032531 | 1.00[CEU][hapmap];0.98[EUR][1000 genomes] |
rs6032532 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6032534 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6032535 | 0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6032536 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6032537 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.92[MEX][hapmap];0.90[MKK][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6032538 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6032541 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.80[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6032544 | 0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6032545 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.80[MEX][hapmap];0.97[TSI][hapmap];0.98[EUR][1000 genomes] |
rs6032548 | 0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6065886 | 0.92[EUR][1000 genomes] |
rs6065892 | 0.85[AFR][1000 genomes];0.86[ASN][1000 genomes] |
rs6065893 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6073905 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6073906 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6073910 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs6104345 | 0.85[ASN][1000 genomes] |
rs6104350 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];0.80[MEX][hapmap];0.97[TSI][hapmap];0.98[EUR][1000 genomes] |
rs6104355 | 0.82[CHB][hapmap];0.80[CHD][hapmap] |
rs6124741 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.80[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes] |
rs6124742 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs8116061 | 0.85[ASN][1000 genomes] |
rs8860 | 0.95[CHB][hapmap];0.83[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
DNTTIP1 | Proximal transcriptional regulation |
PLTP | Distal transcriptional regulation |
WFDC3 | Distal transcriptional regulation |
DNTTIP1 | Distal transcriptional regulation |
PCIF1 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014