SNP Report
Basic Infomation
| Name | rs6065886 dbSNP |
|---|---|
| Location | chr:20,44401630 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 30)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs13037551 | 0.81[ASN][1000 genomes] |
| rs2064504 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2664529 | 0.97[EUR][1000 genomes] |
| rs2664539 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2868349 | 0.92[EUR][1000 genomes] |
| rs3746493 | 0.92[EUR][1000 genomes] |
| rs3746494 | 0.92[EUR][1000 genomes] |
| rs3848711 | 0.82[ASN][1000 genomes] |
| rs390386 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs445503 | 0.82[ASN][1000 genomes] |
| rs4625980 | 0.90[EUR][1000 genomes] |
| rs6032530 | 0.92[EUR][1000 genomes] |
| rs6032531 | 0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6032532 | 0.93[EUR][1000 genomes] |
| rs6032534 | 0.93[EUR][1000 genomes] |
| rs6032535 | 0.92[EUR][1000 genomes] |
| rs6032541 | 0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6032544 | 0.92[EUR][1000 genomes] |
| rs6032545 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6032548 | 0.93[EUR][1000 genomes] |
| rs6065893 | 0.92[EUR][1000 genomes] |
| rs6073905 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6073906 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6104350 | 0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6104355 | 0.82[ASN][1000 genomes] |
| rs6124741 | 0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6124742 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs6130929 | 0.94[ASN][1000 genomes] |
| rs811657 | 0.81[ASN][1000 genomes] |
| rs910396 | 0.87[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| WFDC13 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014