SNP Report
Basic Infomation
| Name | rs811657 dbSNP |
|---|---|
| Location | chr:20,44450199 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs13037551 | 0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2664539 | 0.83[ASN][1000 genomes] |
| rs2742654 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs370237 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs373018 | 0.95[ASN][1000 genomes] |
| rs379059 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs380397 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs380973 | 0.86[EUR][1000 genomes] |
| rs3848711 | 0.94[ASN][1000 genomes] |
| rs386155 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs390386 | 0.87[ASN][1000 genomes] |
| rs4337538 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs437122 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs445503 | 0.94[ASN][1000 genomes] |
| rs4629 | 0.96[ASN][1000 genomes] |
| rs6032531 | 0.85[ASN][1000 genomes] |
| rs6032541 | 0.84[ASN][1000 genomes] |
| rs6032545 | 0.86[ASN][1000 genomes] |
| rs6065886 | 0.81[ASN][1000 genomes] |
| rs6104350 | 0.87[ASN][1000 genomes] |
| rs6104355 | 0.94[ASN][1000 genomes] |
| rs6124741 | 0.83[ASN][1000 genomes] |
| rs8116061 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs8860 | 0.86[EUR][1000 genomes] |
| rs910396 | 0.92[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| UBE2C | Distal transcriptional regulation |
| PLTP | Distal transcriptional regulation |
| WFDC3 | Distal transcriptional regulation |
| DNTTIP1 | Distal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014