SNP Report

Basic Infomation

Name	rs437122 dbSNP
Location	chr:20,44454978
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 61)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs13037551	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs174745	0.86[CHB][hapmap];0.83[MEX][hapmap]
rs197669	0.91[CEU][hapmap];0.86[CHB][hapmap];0.90[LWK][hapmap];0.83[MEX][hapmap];0.87[MKK][hapmap]
rs197671	0.87[CEU][hapmap];0.86[CHB][hapmap]
rs2064504	1.00[CHB][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2077004	0.87[ASN][1000 genomes]
rs2664529	1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2664591	0.86[ASN][1000 genomes]
rs2742654	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2868349	0.87[ASN][1000 genomes]
rs368622	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs370237	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs373018	0.82[CHB][hapmap];0.80[CHD][hapmap]
rs3746493	1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs3746494	1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs3746499	0.83[MEX][hapmap]
rs3761156	0.84[CEU][hapmap]
rs377770	0.84[ASN][1000 genomes]
rs379059	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs380397	0.87[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs380973	0.87[ASW][hapmap];0.84[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.95[LWK][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3817731	0.83[MEX][hapmap]
rs3848711	0.82[CHB][hapmap]
rs386155	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.84[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs390386	0.82[CHB][hapmap];0.84[CHD][hapmap]
rs399672	0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.97[MKK][hapmap];0.87[ASN][1000 genomes]
rs411945	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs426384	0.82[ASW][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.86[MKK][hapmap]
rs4337538	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4608591	0.83[MEX][hapmap]
rs4629	0.82[CHB][hapmap];0.80[CHD][hapmap]
rs4810476	0.83[MEX][hapmap]
rs553359	0.81[MEX][hapmap]
rs567348	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.87[MKK][hapmap];0.86[ASN][1000 genomes]
rs6017692	0.86[ASN][1000 genomes]
rs6032524	0.84[ASN][1000 genomes]
rs6032530	1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6032532	1.00[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6032534	0.85[ASN][1000 genomes]
rs6032535	0.86[ASN][1000 genomes]
rs6032536	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6032537	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.83[MKK][hapmap];0.86[ASN][1000 genomes]
rs6032538	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6032541	0.82[CHB][hapmap];0.86[CHD][hapmap]
rs6032544	1.00[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6032545	0.82[CHB][hapmap];0.86[CHD][hapmap]
rs6032548	0.87[ASN][1000 genomes]
rs6065893	0.86[ASN][1000 genomes]
rs6073905	1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6073906	0.84[ASN][1000 genomes]
rs6073910	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6104350	0.86[CHB][hapmap];0.86[CHD][hapmap]
rs6104355	0.82[CHB][hapmap]
rs6124741	0.82[CHB][hapmap];0.86[CHD][hapmap]
rs6124742	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6130945	0.80[AMR][1000 genomes]
rs742034	0.83[MEX][hapmap]
rs8116061	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8116218	0.84[CEU][hapmap]
rs811657	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8860	0.94[ASW][hapmap];0.84[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
PCIF1	Distal transcriptional regulation
TNNC2	Distal transcriptional regulation
SNX21	Distal transcriptional regulation
DNTTIP1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 7)

eQTL related gene	Source
ZSWIM1	seeQTL
SNX21	SCAN
ZSWIM3	SCAN
CTSA	SCAN
ACOT8	SCAN
PREX1	SCAN
L3MBTL1	SCAN