SNP Report
Basic Infomation
| Name | rs6124741 dbSNP |
|---|---|
| Location | chr:20,44404647 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 62)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11906429 | 0.82[TSI][hapmap] |
| rs12625621 | 0.80[TSI][hapmap] |
| rs13037551 | 0.83[ASN][1000 genomes] |
| rs1386504 | 0.84[CEU][hapmap] |
| rs1386505 | 0.81[CEU][hapmap] |
| rs1487317 | 0.84[CEU][hapmap];0.81[TSI][hapmap] |
| rs2064504 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.88[CHD][hapmap];0.80[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs232286 | 0.81[CEU][hapmap];0.86[GIH][hapmap];0.80[TSI][hapmap] |
| rs2664529 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.80[MEX][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes] |
| rs2664539 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2868349 | 0.91[EUR][1000 genomes] |
| rs370237 | 0.82[CHB][hapmap];0.86[CHD][hapmap] |
| rs373018 | 0.91[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap] |
| rs3746493 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.80[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs3746494 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.80[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs376206 | 0.84[CEU][hapmap];0.81[TSI][hapmap] |
| rs380397 | 0.82[CHB][hapmap];0.86[CHD][hapmap] |
| rs380421 | 0.84[CEU][hapmap];0.81[TSI][hapmap] |
| rs3848711 | 0.91[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.83[ASN][1000 genomes] |
| rs386155 | 0.82[CHB][hapmap];0.86[CHD][hapmap] |
| rs390386 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs399672 | 0.82[CHB][hapmap];0.88[CHD][hapmap] |
| rs411945 | 0.87[CEU][hapmap];0.82[CHB][hapmap] |
| rs426384 | 0.83[CEU][hapmap];0.86[CHD][hapmap] |
| rs437122 | 0.82[CHB][hapmap];0.86[CHD][hapmap] |
| rs445503 | 0.83[ASN][1000 genomes] |
| rs454402 | 0.83[CEU][hapmap] |
| rs456212 | 0.83[CEU][hapmap] |
| rs459955 | 0.84[CEU][hapmap];0.81[TSI][hapmap] |
| rs462145 | 0.84[CEU][hapmap];0.81[TSI][hapmap] |
| rs4625980 | 0.88[EUR][1000 genomes] |
| rs4629 | 0.91[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap] |
| rs567348 | 0.82[CHB][hapmap];0.91[CHD][hapmap] |
| rs6017653 | 0.86[GIH][hapmap];0.81[TSI][hapmap] |
| rs6017667 | 0.84[CEU][hapmap];0.81[TSI][hapmap] |
| rs6032471 | 0.82[CEU][hapmap] |
| rs6032473 | 0.91[CEU][hapmap] |
| rs6032474 | 0.84[CEU][hapmap];0.81[TSI][hapmap] |
| rs6032530 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.80[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes] |
| rs6032531 | 1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6032532 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes] |
| rs6032534 | 0.92[EUR][1000 genomes] |
| rs6032535 | 0.91[EUR][1000 genomes] |
| rs6032536 | 0.85[CEU][hapmap];0.84[CHB][hapmap] |
| rs6032537 | 0.82[CHB][hapmap];0.91[CHD][hapmap] |
| rs6032538 | 0.82[CHB][hapmap] |
| rs6032541 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6032544 | 0.95[CEU][hapmap];0.81[CHB][hapmap];0.83[CHD][hapmap];0.91[EUR][1000 genomes] |
| rs6032545 | 0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6032548 | 0.92[EUR][1000 genomes] |
| rs6065886 | 0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6065893 | 0.91[EUR][1000 genomes] |
| rs6073905 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.80[MEX][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs6073906 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6073910 | 0.82[CHB][hapmap] |
| rs6104350 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6104355 | 0.91[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs6124742 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6130929 | 0.95[ASN][1000 genomes] |
| rs7263437 | 0.80[TSI][hapmap] |
| rs811657 | 0.83[ASN][1000 genomes] |
| rs910396 | 0.88[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000221046 | Proximal transcriptional regulation |
| ENSG00000221046 | Distal transcriptional regulation |
| SDC4 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014