SNP Report
Basic Infomation
| Name | rs6032536 dbSNP |
|---|---|
| Location | chr:20,44417363 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 53)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs174745 | 0.83[CHB][hapmap] |
| rs197669 | 0.83[CHB][hapmap] |
| rs197671 | 0.84[CHB][hapmap] |
| rs2064504 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs2077004 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2138546 | 0.84[AFR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2664529 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2664591 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2742654 | 0.85[ASN][1000 genomes] |
| rs2868349 | 0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs368622 | 0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs370237 | 0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs3746493 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3746494 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs377770 | 0.91[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs379059 | 0.88[ASN][1000 genomes] |
| rs380397 | 1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs380973 | 0.94[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs3848711 | 0.80[CHB][hapmap] |
| rs386155 | 0.81[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs390386 | 0.85[CEU][hapmap];0.84[CHB][hapmap] |
| rs399672 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs411945 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs426384 | 0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4337538 | 0.86[ASN][1000 genomes] |
| rs437122 | 0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs4625980 | 0.92[ASN][1000 genomes] |
| rs567348 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6017692 | 0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6032524 | 0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6032530 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs6032531 | 0.84[CEU][hapmap] |
| rs6032532 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6032534 | 0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6032535 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6032537 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6032538 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6032541 | 0.85[CEU][hapmap];0.84[CHB][hapmap] |
| rs6032544 | 0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6032545 | 0.85[CEU][hapmap];0.84[CHB][hapmap] |
| rs6032548 | 0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6065892 | 0.94[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6065893 | 0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6073905 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs6073906 | 0.98[ASN][1000 genomes] |
| rs6073910 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6104345 | 0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6104350 | 0.89[CEU][hapmap];0.84[CHB][hapmap] |
| rs6124741 | 0.85[CEU][hapmap];0.84[CHB][hapmap] |
| rs6124742 | 0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs8116061 | 0.85[ASN][1000 genomes] |
| rs8860 | 0.94[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs910396 | 0.88[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DNTTIP1 | Proximal transcriptional regulation |
| WFDC3 | Distal transcriptional regulation |
| DNTTIP1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014