SNP Report

Basic Infomation

Name	rs174745 dbSNP
Location	chr:20,44475413
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 56)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1045493	0.81[CEU][hapmap]
rs1516580	0.96[CEU][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs191805	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs197662	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs197669	1.00[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs197670	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs197671	1.00[CHB][hapmap];0.85[YRI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2064504	0.85[CHB][hapmap]
rs2075961	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2075962	0.96[CEU][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2075963	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2664529	0.86[CHB][hapmap]
rs2868358	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2868362	0.81[CEU][hapmap]
rs2903808	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs370237	0.86[CHB][hapmap];0.83[MEX][hapmap]
rs3746493	0.86[CHB][hapmap]
rs3746494	0.86[CHB][hapmap]
rs3746497	0.81[CEU][hapmap]
rs3746499	0.96[CEU][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs380397	0.88[ASW][hapmap];0.86[CHB][hapmap];0.83[MEX][hapmap]
rs380973	0.88[ASW][hapmap];0.81[CHB][hapmap]
rs3817731	0.96[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3848713	0.95[CEU][hapmap];0.89[GIH][hapmap];0.96[EUR][1000 genomes]
rs386155	0.88[ASW][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap]
rs399672	0.86[CHB][hapmap]
rs411945	0.86[CHB][hapmap]
rs426384	0.82[ASW][hapmap]
rs4337538	0.80[ASN][1000 genomes]
rs437122	0.86[CHB][hapmap];0.83[MEX][hapmap]
rs4608591	0.96[CEU][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.81[YRI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4810476	0.96[CEU][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.82[TSI][hapmap];0.81[YRI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4812974	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs553359	0.92[CEU][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs567348	0.86[CHB][hapmap]
rs59782893	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6032530	0.86[CHB][hapmap]
rs6032532	0.86[CHB][hapmap]
rs6032536	0.83[CHB][hapmap]
rs6032537	0.85[CHB][hapmap]
rs6032538	0.86[CHB][hapmap]
rs6032544	0.85[CHB][hapmap]
rs6032570	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6073905	0.86[CHB][hapmap]
rs6073910	0.86[CHB][hapmap]
rs6094223	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6094224	0.81[CEU][hapmap]
rs6104374	0.81[CEU][hapmap]
rs6104385	0.81[CEU][hapmap]
rs6124742	0.81[CHB][hapmap]
rs6130945	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6130958	0.85[CEU][hapmap]
rs6514065	0.85[CEU][hapmap]
rs7268221	0.81[CEU][hapmap]
rs742034	0.96[CEU][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8860	0.81[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
ACOT8	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 8)

eQTL related gene	Source
DNTTIP1	SCAN
ZSWIM3	SCAN
CTSA	SCAN
ACOT8	SCAN
CTSA	SCAN
GTSF1L	SCAN
NEURL2	SCAN
CDH22	SCAN