SNP Report
Basic Infomation
| Name | rs197670 dbSNP |
|---|---|
| Location | chr:20,44468512 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs174745 | 0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs191805 | 0.80[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs197662 | 0.83[AMR][1000 genomes] |
| rs197669 | 0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs197671 | 0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2075961 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs2075963 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs2742654 | 0.81[AFR][1000 genomes];0.80[AMR][1000 genomes] |
| rs2868358 | 0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3761156 | 0.84[EUR][1000 genomes] |
| rs380397 | 0.80[AMR][1000 genomes] |
| rs386155 | 0.81[AFR][1000 genomes];0.80[AMR][1000 genomes] |
| rs4337538 | 0.86[AFR][1000 genomes];0.80[AMR][1000 genomes] |
| rs4608591 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs4810476 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs4812967 | 0.84[EUR][1000 genomes] |
| rs4812972 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs59782893 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs6032570 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs6104373 | 0.83[EUR][1000 genomes] |
| rs6130945 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs760558 | 0.84[EUR][1000 genomes] |
| rs8116061 | 0.81[AFR][1000 genomes];0.80[AMR][1000 genomes] |
| rs8116218 | 0.84[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TNNC2 | Distal transcriptional regulation |
| SNX21 | Distal transcriptional regulation |
| ACOT8 | Distal transcriptional regulation |
| ZSWIM3 | Distal transcriptional regulation |
| NEURL2 | Distal transcriptional regulation |
| CTSA | Distal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| SNX21 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014