SNP Report
Basic Infomation
| Name | rs197662 dbSNP |
|---|---|
| Location | chr:20,44475606 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1516580 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs174745 | 0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs191805 | 0.92[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs197669 | 0.83[AMR][1000 genomes] |
| rs197670 | 0.83[AMR][1000 genomes] |
| rs197671 | 0.83[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2075961 | 0.94[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2075962 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2075963 | 0.94[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2868358 | 0.83[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs3746499 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs3817731 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs3848713 | 0.93[EUR][1000 genomes] |
| rs4608591 | 0.94[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4810476 | 0.94[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4812974 | 0.82[EUR][1000 genomes] |
| rs553359 | 0.87[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs59782893 | 0.94[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6032570 | 0.94[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6094223 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs6130945 | 0.84[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs742034 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TNNC2 | Distal transcriptional regulation |
| SNX21 | Distal transcriptional regulation |
| ACOT8 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014