SNP Report
Name | rs3817731   dbSNP |
---|---|
Location | chr:20,44518843 |
Allele | A/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1045493 | 0.85[CEU][hapmap] |
rs13045440 | 0.82[EUR][1000 genomes] |
rs1516580 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs174745 | 0.96[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs191805 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs197662 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs197669 | 1.00[MEX][hapmap] |
rs2075961 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs2075962 | 1.00[CEU][hapmap];0.84[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2075963 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs2868362 | 0.85[CEU][hapmap] |
rs2903808 | 0.96[CEU][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes] |
rs370237 | 0.83[MEX][hapmap] |
rs3746497 | 0.85[CEU][hapmap] |
rs3746499 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs380397 | 0.83[MEX][hapmap] |
rs3848713 | 0.90[CEU][hapmap];0.90[EUR][1000 genomes] |
rs386155 | 0.83[MEX][hapmap] |
rs437122 | 0.83[MEX][hapmap] |
rs4608591 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs4810476 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs4812972 | 0.80[EUR][1000 genomes] |
rs4812974 | 0.96[CEU][hapmap];0.88[EUR][1000 genomes] |
rs553359 | 0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs59782893 | 0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs6032570 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs6094223 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6094224 | 0.85[CEU][hapmap] |
rs6104374 | 0.86[CEU][hapmap] |
rs6104385 | 0.85[CEU][hapmap] |
rs6130958 | 0.90[CEU][hapmap] |
rs6514065 | 0.88[CEU][hapmap];0.81[TSI][hapmap] |
rs7268221 | 0.85[CEU][hapmap] |
rs742034 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.98[TSI][hapmap];0.83[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
CTSA | Proximal transcriptional regulation |
SPATA25 | Proximal transcriptional regulation |
PCIF1 | Distal transcriptional regulation |
ZNF335 | Distal transcriptional regulation |
ACOT8 | Distal transcriptional regulation |
ZSWIM3 | Distal transcriptional regulation |
SNX21 | Distal transcriptional regulation |
CTSA | Distal transcriptional regulation |
NEURL2 | Distal transcriptional regulation |
NEURL2 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014