SNP Report
Basic Infomation
| Name | rs4812972 dbSNP |
|---|---|
| Location | chr:20,44503099 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs191805 | 0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs197669 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs197670 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs197671 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs2075961 | 0.84[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2075962 | 0.81[EUR][1000 genomes] |
| rs2075963 | 0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2868358 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs3746499 | 0.81[EUR][1000 genomes] |
| rs3761156 | 0.84[EUR][1000 genomes] |
| rs3817731 | 0.80[EUR][1000 genomes] |
| rs4608591 | 0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4810476 | 0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4812967 | 0.84[EUR][1000 genomes] |
| rs553359 | 0.81[EUR][1000 genomes] |
| rs59782893 | 0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6032570 | 0.89[AFR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6094223 | 0.81[EUR][1000 genomes] |
| rs6104373 | 0.83[EUR][1000 genomes] |
| rs6130945 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs742034 | 0.81[EUR][1000 genomes] |
| rs760558 | 0.84[EUR][1000 genomes] |
| rs8116218 | 0.84[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ACOT8 | Distal transcriptional regulation |
| ZSWIM3 | Distal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| ZSWIM1 | Distal transcriptional regulation |
| ZNF335 | Distal transcriptional regulation |
| NEURL2 | Distal transcriptional regulation |
| CTSA | Distal transcriptional regulation |
| TNNC2 | Distal transcriptional regulation |
| SNX21 | Distal transcriptional regulation |
| ZSWIM3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014