SNP Report
Basic Infomation
| Name | rs3761156 dbSNP |
|---|---|
| Location | chr:20,44488495 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 29)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs13045440 | 0.86[AFR][1000 genomes];0.89[ASN][1000 genomes] |
| rs197669 | 0.84[CEU][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes] |
| rs197670 | 0.84[EUR][1000 genomes] |
| rs197671 | 0.86[EUR][1000 genomes] |
| rs2868358 | 0.84[EUR][1000 genomes] |
| rs2868359 | 0.81[CHD][hapmap] |
| rs2903808 | 0.94[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.96[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs370237 | 0.84[CEU][hapmap] |
| rs380973 | 0.83[CEU][hapmap] |
| rs3848713 | 0.90[MEX][hapmap] |
| rs386155 | 0.84[CEU][hapmap] |
| rs437122 | 0.84[CEU][hapmap] |
| rs4608591 | 0.88[TSI][hapmap] |
| rs4810476 | 0.88[TSI][hapmap] |
| rs4812967 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4812972 | 0.84[EUR][1000 genomes] |
| rs4812974 | 1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes] |
| rs553359 | 0.83[TSI][hapmap] |
| rs6094220 | 0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6104373 | 0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6104374 | 0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6130945 | 0.85[EUR][1000 genomes] |
| rs6130953 | 0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs6130954 | 0.88[CEU][hapmap];0.81[CHD][hapmap];0.80[TSI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs6514065 | 0.83[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];0.93[TSI][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6514066 | 0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs760558 | 0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs8116218 | 0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8860 | 0.83[CEU][hapmap];0.81[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ACOT8 | Proximal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| ACOT8 | Distal transcriptional regulation |
| ZSWIM3 | Distal transcriptional regulation |
| NEURL2 | Distal transcriptional regulation |
| CTSA | Distal transcriptional regulation |
| TNNC2 | Distal transcriptional regulation |
| SNX21 | Distal transcriptional regulation |
| ZSWIM3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 9)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014