SNP Report
Basic Infomation
| Name | rs760558 dbSNP |
|---|---|
| Location | chr:20,44485062 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs13045440 | 0.88[ASN][1000 genomes] |
| rs197669 | 0.84[EUR][1000 genomes] |
| rs197670 | 0.84[EUR][1000 genomes] |
| rs197671 | 0.86[EUR][1000 genomes] |
| rs2868358 | 0.84[EUR][1000 genomes] |
| rs2903808 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3761156 | 0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4812967 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4812972 | 0.84[EUR][1000 genomes] |
| rs6094220 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6104373 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6104374 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6130945 | 0.85[EUR][1000 genomes] |
| rs6130953 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs6130954 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs6514065 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6514066 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs8116218 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ACOT8 | Proximal transcriptional regulation |
| ZSWIM3 | Proximal transcriptional regulation |
| TNNC2 | Distal transcriptional regulation |
| SNX21 | Distal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| NCOA5 | Distal transcriptional regulation |
| NEURL2 | Distal transcriptional regulation |
| CTSA | Distal transcriptional regulation |
| EIF2B5 | Distal transcriptional regulation |
| SPATA25 | Distal transcriptional regulation |
| ZSWIM1 | Distal transcriptional regulation |
| UBE2C | Distal transcriptional regulation |
| ACOT8 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014