SNP Report
Basic Infomation
| Name | rs2903808 dbSNP |
|---|---|
| Location | chr:20,44505973 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 51)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1045493 | 0.88[CEU][hapmap];0.80[CHD][hapmap];0.81[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11699781 | 0.82[AMR][1000 genomes] |
| rs13045440 | 0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1516580 | 0.96[CEU][hapmap];0.81[TSI][hapmap] |
| rs174745 | 0.92[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs191805 | 0.90[EUR][1000 genomes] |
| rs1967656 | 0.82[CEU][hapmap] |
| rs2075961 | 0.89[EUR][1000 genomes] |
| rs2075962 | 0.96[CEU][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes] |
| rs2075963 | 0.89[EUR][1000 genomes] |
| rs2868359 | 0.82[CEU][hapmap];0.81[TSI][hapmap];0.82[AMR][1000 genomes] |
| rs2868360 | 0.84[AMR][1000 genomes] |
| rs2868362 | 0.88[CEU][hapmap] |
| rs3746497 | 0.88[CEU][hapmap] |
| rs3746499 | 0.96[CEU][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs3761154 | 0.82[AMR][1000 genomes] |
| rs3761156 | 0.94[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.96[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3817731 | 0.96[CEU][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes] |
| rs3848713 | 0.85[CEU][hapmap];0.95[MEX][hapmap];0.83[EUR][1000 genomes] |
| rs445503 | 0.81[CEU][hapmap] |
| rs4608591 | 0.96[CEU][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes] |
| rs4810476 | 0.96[CEU][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes] |
| rs4812967 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4812974 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs553359 | 0.92[CEU][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs59782893 | 0.89[EUR][1000 genomes] |
| rs6032570 | 0.89[EUR][1000 genomes] |
| rs6094218 | 0.83[AMR][1000 genomes] |
| rs6094220 | 0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6094223 | 0.81[EUR][1000 genomes] |
| rs6094224 | 0.88[CEU][hapmap] |
| rs6104372 | 0.83[AMR][1000 genomes] |
| rs6104373 | 0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6104374 | 0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6104376 | 0.84[AMR][1000 genomes] |
| rs6104379 | 0.81[AMR][1000 genomes] |
| rs6104383 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs6104384 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs6104385 | 0.90[CEU][hapmap];0.82[AMR][1000 genomes] |
| rs6124752 | 0.82[AMR][1000 genomes] |
| rs6130950 | 0.84[AMR][1000 genomes] |
| rs6130951 | 0.81[AMR][1000 genomes] |
| rs6130957 | 0.84[AMR][1000 genomes] |
| rs6130958 | 0.95[CEU][hapmap];0.84[AMR][1000 genomes] |
| rs6130959 | 0.82[CEU][hapmap];0.81[TSI][hapmap];0.83[AMR][1000 genomes] |
| rs6514065 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs722669 | 0.82[CEU][hapmap] |
| rs7268221 | 0.88[CEU][hapmap] |
| rs742034 | 0.96[CEU][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes] |
| rs760558 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs8116218 | 1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];0.93[TSI][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZSWIM1 | Proximal transcriptional regulation |
| CTSA | Distal transcriptional regulation |
| NEURL2 | Distal transcriptional regulation |
| ACOT8 | Distal transcriptional regulation |
| ZSWIM3 | Distal transcriptional regulation |
| ZSWIM3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014