SNP Report
Name | rs6104373   dbSNP |
---|---|
Location | chr:20,44497912 |
Allele | A/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs13045440 | 0.87[AFR][1000 genomes];0.88[ASN][1000 genomes] |
rs197669 | 0.83[EUR][1000 genomes] |
rs197670 | 0.83[EUR][1000 genomes] |
rs197671 | 0.85[EUR][1000 genomes] |
rs2868358 | 0.83[EUR][1000 genomes] |
rs2903808 | 0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs3761156 | 0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs4812967 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs4812972 | 0.83[EUR][1000 genomes] |
rs6094220 | 0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6104374 | 0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6130945 | 0.84[EUR][1000 genomes] |
rs6130953 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs6130954 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs6514065 | 0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6514066 | 0.82[AMR][1000 genomes] |
rs760558 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs8116218 | 0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
ACOT8 | Distal transcriptional regulation |
CTSA | Distal transcriptional regulation |
ZSWIM3 | Distal transcriptional regulation |
ZSWIM3 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014