SNP Report

Basic Infomation

Name	rs6104374 dbSNP
Location	chr:20,44498391
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 61)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1045493	0.85[CEU][hapmap];0.84[CHB][hapmap];0.84[AMR][1000 genomes]
rs11699781	0.81[AMR][1000 genomes]
rs13045440	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1516580	0.85[CEU][hapmap]
rs174745	0.81[CEU][hapmap]
rs191805	0.85[EUR][1000 genomes]
rs1967656	0.90[CEU][hapmap];0.84[CHB][hapmap]
rs2075961	0.84[EUR][1000 genomes]
rs2075962	0.86[CEU][hapmap]
rs2075963	0.84[EUR][1000 genomes]
rs2868359	0.90[CEU][hapmap];0.84[CHB][hapmap];0.83[AMR][1000 genomes]
rs2868360	0.85[AMR][1000 genomes]
rs2868362	0.85[CEU][hapmap]
rs2903808	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs373018	0.90[CEU][hapmap]
rs3746497	0.85[CEU][hapmap];0.84[CHB][hapmap]
rs3746499	0.86[CEU][hapmap]
rs3761154	0.83[AMR][1000 genomes]
rs3761156	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs378710	0.91[CEU][hapmap]
rs380973	0.81[CEU][hapmap]
rs3817731	0.86[CEU][hapmap]
rs3848711	0.95[CEU][hapmap]
rs445503	1.00[CEU][hapmap]
rs4608591	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs4629	0.90[CEU][hapmap]
rs4638862	0.90[CEU][hapmap]
rs4810476	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs4812967	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4812974	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs553359	0.86[CEU][hapmap]
rs59782893	0.85[EUR][1000 genomes]
rs6032570	0.85[EUR][1000 genomes]
rs6094218	0.84[AMR][1000 genomes]
rs6094220	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6094224	0.85[CEU][hapmap];0.84[CHB][hapmap]
rs6104355	0.95[CEU][hapmap]
rs6104372	0.84[AMR][1000 genomes]
rs6104373	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6104376	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6104378	0.80[AMR][1000 genomes]
rs6104379	0.82[AMR][1000 genomes]
rs6104383	0.84[AMR][1000 genomes]
rs6104384	0.84[AMR][1000 genomes]
rs6104385	0.83[CEU][hapmap];0.81[AMR][1000 genomes]
rs6124752	0.83[AMR][1000 genomes]
rs6130950	0.85[AMR][1000 genomes]
rs6130951	0.82[AMR][1000 genomes]
rs6130953	0.85[CHB][hapmap]
rs6130954	0.84[CHB][hapmap]
rs6130957	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6130958	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6130959	0.90[CEU][hapmap];0.84[CHB][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6514065	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6514066	0.85[CHB][hapmap]
rs722669	0.90[CEU][hapmap];0.84[CHB][hapmap]
rs7268221	0.85[CEU][hapmap];0.84[CHB][hapmap]
rs742034	0.86[CEU][hapmap]
rs760558	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8116218	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8860	0.81[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
CTSA	Distal transcriptional regulation
ZSWIM3	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)