SNP Report
Basic Infomation
| Name | rs4638862 dbSNP |
|---|---|
| Location | chr:20,44469290 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 65)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1045493 | 0.81[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.83[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs11696196 | 1.00[LWK][hapmap];1.00[YRI][hapmap] |
| rs11699781 | 0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11699807 | 0.87[CHB][hapmap];0.82[JPT][hapmap] |
| rs11906429 | 0.82[CEU][hapmap];0.87[CHB][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap] |
| rs11906879 | 1.00[LWK][hapmap] |
| rs11907982 | 0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12625621 | 0.82[CEU][hapmap];0.87[CHB][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap] |
| rs13041788 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1967656 | 0.88[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2007155 | 0.89[AFR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs232259 | 0.93[GIH][hapmap];0.95[MKK][hapmap] |
| rs232262 | 0.85[GIH][hapmap] |
| rs232291 | 0.85[GIH][hapmap] |
| rs2868359 | 0.88[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes] |
| rs2868360 | 0.90[EUR][1000 genomes] |
| rs2868362 | 0.81[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs373018 | 0.96[CEU][hapmap];1.00[GIH][hapmap] |
| rs3746497 | 0.81[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.87[MKK][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs3761154 | 0.90[EUR][1000 genomes] |
| rs378710 | 0.96[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap] |
| rs3848711 | 0.85[CEU][hapmap] |
| rs3848713 | 0.82[CHB][hapmap] |
| rs3848719 | 0.90[LWK][hapmap] |
| rs445503 | 0.86[CEU][hapmap] |
| rs4629 | 0.96[CEU][hapmap];0.95[GIH][hapmap] |
| rs464318 | 0.93[GIH][hapmap] |
| rs6032449 | 0.83[GIH][hapmap] |
| rs6032533 | 0.84[CEU][hapmap];0.86[CHB][hapmap];0.80[JPT][hapmap] |
| rs6065889 | 0.83[CHB][hapmap];0.82[JPT][hapmap] |
| rs6073912 | 0.82[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap] |
| rs6094218 | 0.89[EUR][1000 genomes] |
| rs6094224 | 0.81[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs6104355 | 0.85[CEU][hapmap] |
| rs6104372 | 0.90[EUR][1000 genomes] |
| rs6104374 | 0.90[CEU][hapmap] |
| rs6104375 | 0.80[EUR][1000 genomes] |
| rs6104376 | 0.89[EUR][1000 genomes] |
| rs6104378 | 0.86[EUR][1000 genomes] |
| rs6104379 | 0.85[EUR][1000 genomes] |
| rs6104380 | 0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6104383 | 0.86[EUR][1000 genomes] |
| rs6104384 | 0.86[EUR][1000 genomes] |
| rs6104385 | 0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6104387 | 0.91[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs6104390 | 0.88[EUR][1000 genomes] |
| rs6124749 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6124752 | 0.89[EUR][1000 genomes] |
| rs6130930 | 0.84[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap] |
| rs6130946 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs6130947 | 0.91[CHB][hapmap] |
| rs6130950 | 0.90[EUR][1000 genomes] |
| rs6130951 | 0.84[EUR][1000 genomes] |
| rs6130953 | 0.95[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes] |
| rs6130954 | 0.95[CHB][hapmap];0.83[JPT][hapmap];0.80[EUR][1000 genomes] |
| rs6130955 | 0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6130956 | 0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6130957 | 0.89[EUR][1000 genomes] |
| rs6130958 | 0.89[CEU][hapmap];0.89[EUR][1000 genomes] |
| rs6130959 | 0.88[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes] |
| rs6514066 | 0.95[CHB][hapmap];0.83[JPT][hapmap] |
| rs722669 | 0.88[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7263437 | 0.82[CEU][hapmap];0.83[CHB][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap] |
| rs7268221 | 0.81[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7270170 | 0.87[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TNNC2 | Distal transcriptional regulation |
| SNX21 | Distal transcriptional regulation |
| ACOT8 | Distal transcriptional regulation |
| ZSWIM3 | Distal transcriptional regulation |
| WFDC3 | Distal transcriptional regulation |
| DNTTIP1 | Distal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| SNX21 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014