SNP Report

Basic Infomation

Name	rs464318 dbSNP
Location	chr:20,44378173
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 46)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11906429	0.92[CEU][hapmap];0.95[GIH][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap]
rs12625621	0.92[CEU][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap]
rs1386504	0.88[CEU][hapmap];0.91[TSI][hapmap]
rs1487317	0.88[CEU][hapmap];0.93[TSI][hapmap]
rs1967656	0.82[GIH][hapmap]
rs232259	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs232262	0.93[GIH][hapmap]
rs232290	0.84[CEU][hapmap]
rs232291	0.84[CEU][hapmap];0.93[GIH][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap]
rs2425748	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2425749	0.84[EUR][1000 genomes]
rs2868362	0.82[GIH][hapmap]
rs34959201	0.80[EUR][1000 genomes]
rs36051332	0.82[EUR][1000 genomes]
rs373018	0.93[GIH][hapmap]
rs3746497	0.82[GIH][hapmap]
rs376206	0.88[CEU][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs380421	0.88[CEU][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs400622	0.86[EUR][1000 genomes]
rs438865	0.86[EUR][1000 genomes]
rs454402	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs455451	0.88[EUR][1000 genomes]
rs456212	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs459955	0.88[CEU][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs460043	0.86[EUR][1000 genomes]
rs460096	0.84[EUR][1000 genomes]
rs460733	0.86[EUR][1000 genomes]
rs462145	0.88[CEU][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs4629	0.93[GIH][hapmap]
rs4638862	0.93[GIH][hapmap]
rs6017667	0.88[CEU][hapmap];0.93[TSI][hapmap]
rs6032449	0.90[GIH][hapmap]
rs6032471	0.91[CEU][hapmap]
rs6032473	0.87[CEU][hapmap]
rs6032474	0.88[CEU][hapmap];0.93[TSI][hapmap]
rs6032533	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs6032549	0.82[EUR][1000 genomes]
rs6073888	0.85[EUR][1000 genomes]
rs6073912	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs6073913	0.82[EUR][1000 genomes]
rs6073915	0.82[EUR][1000 genomes]
rs6130930	0.91[CEU][hapmap]
rs62215016	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs722669	0.82[GIH][hapmap]
rs7263437	0.92[CEU][hapmap];0.95[GIH][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap]
rs7268221	0.82[GIH][hapmap]

rSNP related genes

Symbol	Regulation type
SPINT5P	Proximal transcriptional regulation
HNRNPA1P3	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 6)

eQTL related gene	Source
DNTTIP1	SCAN
CTSA	SCAN
ACOT8	SCAN
C20orf165	SCAN
DNTTIP1	SCAN
CYP26B1	SCAN