SNP Report
Basic Infomation
| Name | rs6032449 dbSNP |
|---|---|
| Location | chr:20,44336716 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 38)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11906429 | 0.85[GIH][hapmap] |
| rs12625621 | 0.85[GIH][hapmap] |
| rs1386504 | 0.85[ASW][hapmap];0.88[CEU][hapmap];0.84[TSI][hapmap] |
| rs1386505 | 0.82[CEU][hapmap] |
| rs1487317 | 0.85[ASW][hapmap];0.88[CEU][hapmap];0.82[TSI][hapmap] |
| rs1487320 | 0.81[CEU][hapmap] |
| rs232259 | 0.90[GIH][hapmap];0.83[JPT][hapmap] |
| rs232262 | 1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs232263 | 0.88[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs232267 | 0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs232268 | 0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs232270 | 0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs232285 | 0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs232286 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs232290 | 0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs232291 | 0.92[CEU][hapmap];0.85[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs373018 | 0.83[GIH][hapmap] |
| rs376206 | 0.88[CEU][hapmap];0.82[TSI][hapmap] |
| rs380421 | 0.88[CEU][hapmap];0.82[TSI][hapmap] |
| rs454402 | 0.88[CEU][hapmap] |
| rs456212 | 0.88[CEU][hapmap] |
| rs459955 | 0.88[CEU][hapmap];0.82[TSI][hapmap] |
| rs462145 | 0.88[CEU][hapmap];0.82[TSI][hapmap] |
| rs4629 | 0.83[GIH][hapmap] |
| rs4638862 | 0.83[GIH][hapmap] |
| rs464318 | 0.90[GIH][hapmap] |
| rs6017653 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6017667 | 0.85[ASW][hapmap];0.88[CEU][hapmap];0.82[TSI][hapmap] |
| rs6032454 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6032467 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6032468 | 0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6032469 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6032471 | 0.87[CEU][hapmap] |
| rs6032473 | 0.91[CEU][hapmap] |
| rs6032474 | 0.85[ASW][hapmap];0.88[CEU][hapmap];0.82[TSI][hapmap] |
| rs6094202 | 1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7263437 | 0.85[GIH][hapmap] |
| rs980984 | 0.81[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.80[TSI][hapmap];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| WFDC13 | Proximal transcriptional regulation |
| WFDC10B | Proximal transcriptional regulation |
| MIR3617 | Proximal transcriptional regulation |
| WFDC13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014