SNP Report
Basic Infomation
| Name | rs232259 dbSNP |
|---|---|
| Location | chr:20,44354387 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 48)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11086984 | 1.00[YRI][hapmap] |
| rs11906429 | 0.92[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap] |
| rs12625621 | 0.92[CEU][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap] |
| rs1386504 | 0.88[CEU][hapmap];0.91[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs1487317 | 0.88[CEU][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs17433698 | 1.00[YRI][hapmap] |
| rs1967656 | 0.82[GIH][hapmap];0.89[MKK][hapmap] |
| rs2021501 | 0.81[EUR][1000 genomes] |
| rs232262 | 0.93[GIH][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs232263 | 0.88[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs232267 | 0.89[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs232268 | 0.88[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs232270 | 0.89[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs232285 | 0.84[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs232286 | 0.83[JPT][hapmap] |
| rs232290 | 0.84[CEU][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs232291 | 0.84[CEU][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.88[JPT][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2425748 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2868362 | 0.82[GIH][hapmap] |
| rs373018 | 0.93[GIH][hapmap] |
| rs3746497 | 0.82[GIH][hapmap];0.82[MKK][hapmap] |
| rs376206 | 0.88[CEU][hapmap];0.93[TSI][hapmap] |
| rs380421 | 0.88[CEU][hapmap];0.93[TSI][hapmap] |
| rs454402 | 0.92[CEU][hapmap] |
| rs456212 | 0.88[CEU][hapmap] |
| rs459955 | 0.88[CEU][hapmap];0.93[TSI][hapmap] |
| rs462145 | 0.88[CEU][hapmap];0.93[TSI][hapmap] |
| rs4629 | 0.93[GIH][hapmap] |
| rs4638862 | 0.93[GIH][hapmap];0.95[MKK][hapmap] |
| rs464318 | 1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6017653 | 0.83[JPT][hapmap] |
| rs6017663 | 0.83[EUR][1000 genomes] |
| rs6017664 | 0.83[EUR][1000 genomes] |
| rs6017665 | 0.83[EUR][1000 genomes] |
| rs6017666 | 0.82[EUR][1000 genomes] |
| rs6017667 | 0.88[CEU][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs6032449 | 0.90[GIH][hapmap];0.83[JPT][hapmap] |
| rs6032471 | 0.91[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs6032472 | 0.83[EUR][1000 genomes] |
| rs6032473 | 0.87[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs6032474 | 0.88[CEU][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes] |
| rs6032533 | 0.96[CEU][hapmap] |
| rs6073912 | 0.92[CEU][hapmap];1.00[YRI][hapmap] |
| rs6130930 | 0.91[CEU][hapmap];1.00[YRI][hapmap] |
| rs722669 | 0.82[GIH][hapmap];0.89[MKK][hapmap] |
| rs7263437 | 0.92[CEU][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap] |
| rs7268221 | 0.82[GIH][hapmap] |
| rs980984 | 0.83[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SPINT4 | Proximal transcriptional regulation |
| SPINT4 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014