SNP Report

Basic Infomation

Name	rs6073912 dbSNP
Location	chr:20,44413095
Allele	C/G

LD-proxy of rSNPs(r²>0.8) (count: 53)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1045493	0.82[CHB][hapmap]
rs11086984	1.00[YRI][hapmap]
rs11699807	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11906429	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12624645	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12625621	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1386504	0.80[CEU][hapmap]
rs1487317	0.80[CEU][hapmap]
rs1967656	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs232259	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs2425748	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2868359	0.82[CHB][hapmap]
rs2868362	0.82[JPT][hapmap]
rs34959201	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36051332	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs373018	0.85[CEU][hapmap]
rs3746497	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs376206	0.80[CEU][hapmap]
rs378710	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs380421	0.80[CEU][hapmap]
rs383112	0.80[ASN][1000 genomes]
rs454402	0.83[CEU][hapmap]
rs456212	0.81[CEU][hapmap]
rs459955	0.80[CEU][hapmap]
rs462145	0.80[CEU][hapmap]
rs4629	0.85[CEU][hapmap]
rs4638862	0.82[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap]
rs464318	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs558554	0.83[ASN][1000 genomes]
rs6017667	0.80[CEU][hapmap]
rs6032471	0.83[CEU][hapmap]
rs6032473	0.80[CEU][hapmap]
rs6032474	0.80[CEU][hapmap]
rs6032533	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6032549	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6065889	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6065891	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6073913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6073915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6073916	0.90[ASN][1000 genomes]
rs6094224	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs6124746	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6130930	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6130941	0.87[AFR][1000 genomes]
rs6130946	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs6130953	0.82[CHB][hapmap]
rs6130954	0.82[CHB][hapmap]
rs6130959	0.82[CHB][hapmap]
rs62215016	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6514066	0.83[CHB][hapmap]
rs722669	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs7263437	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7268221	0.82[CHB][hapmap];0.82[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
WFDC3	Proximal transcriptional regulation
FTLP1	Distal transcriptional regulation
PCIF1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)