SNP Report
Basic Infomation
| Name | rs558554 dbSNP |
|---|---|
| Location | chr:20,44454421 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11699807 | 0.84[ASN][1000 genomes] |
| rs11906429 | 0.84[ASN][1000 genomes] |
| rs12624645 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12625621 | 0.84[ASN][1000 genomes] |
| rs36051332 | 0.84[ASN][1000 genomes] |
| rs373018 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs378710 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs383112 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3848711 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs445503 | 0.82[EUR][1000 genomes] |
| rs4629 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6032533 | 0.83[ASN][1000 genomes] |
| rs6032549 | 0.83[ASN][1000 genomes] |
| rs6065889 | 0.83[ASN][1000 genomes] |
| rs6073912 | 0.83[ASN][1000 genomes] |
| rs6073913 | 0.83[ASN][1000 genomes] |
| rs6073915 | 0.82[ASN][1000 genomes] |
| rs6104355 | 0.82[EUR][1000 genomes] |
| rs6124746 | 0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6130930 | 0.83[ASN][1000 genomes] |
| rs6130941 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6130942 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs62215016 | 0.83[ASN][1000 genomes] |
| rs7263437 | 0.83[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PCIF1 | Distal transcriptional regulation |
| DNTTIP1 | Distal transcriptional regulation |
| TNNC2 | Distal transcriptional regulation |
| SNX21 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014