SNP Report
Name | rs558554   dbSNP |
---|---|
Location | chr:20,44454421 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs11699807 | 0.84[ASN][1000 genomes] |
rs11906429 | 0.84[ASN][1000 genomes] |
rs12624645 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12625621 | 0.84[ASN][1000 genomes] |
rs36051332 | 0.84[ASN][1000 genomes] |
rs373018 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs378710 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs383112 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs3848711 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs445503 | 0.82[EUR][1000 genomes] |
rs4629 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs6032533 | 0.83[ASN][1000 genomes] |
rs6032549 | 0.83[ASN][1000 genomes] |
rs6065889 | 0.83[ASN][1000 genomes] |
rs6073912 | 0.83[ASN][1000 genomes] |
rs6073913 | 0.83[ASN][1000 genomes] |
rs6073915 | 0.82[ASN][1000 genomes] |
rs6104355 | 0.82[EUR][1000 genomes] |
rs6124746 | 0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6130930 | 0.83[ASN][1000 genomes] |
rs6130941 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6130942 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs62215016 | 0.83[ASN][1000 genomes] |
rs7263437 | 0.83[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
PCIF1 | Distal transcriptional regulation |
DNTTIP1 | Distal transcriptional regulation |
TNNC2 | Distal transcriptional regulation |
SNX21 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014