SNP Report
Basic Infomation
| Name | rs6065889 dbSNP |
|---|---|
| Location | chr:20,44409252 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11699807 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11906429 | 0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs12624645 | 0.83[ASN][1000 genomes] |
| rs12625621 | 0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs1967656 | 0.82[JPT][hapmap] |
| rs2868362 | 0.82[JPT][hapmap] |
| rs36051332 | 0.96[ASN][1000 genomes] |
| rs3746497 | 0.82[JPT][hapmap] |
| rs378710 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs383112 | 0.81[ASN][1000 genomes] |
| rs4638862 | 0.83[CHB][hapmap];0.82[JPT][hapmap] |
| rs558554 | 0.83[ASN][1000 genomes] |
| rs6032533 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs6032549 | 0.92[ASN][1000 genomes] |
| rs6065891 | 0.86[ASN][1000 genomes] |
| rs6073912 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs6073913 | 0.98[ASN][1000 genomes] |
| rs6073915 | 0.94[ASN][1000 genomes] |
| rs6073916 | 0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6094224 | 0.82[JPT][hapmap] |
| rs6124746 | 0.85[ASN][1000 genomes] |
| rs6130867 | 0.89[MKK][hapmap] |
| rs6130930 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs6130946 | 1.00[ASW][hapmap];0.83[CHB][hapmap];0.81[GIH][hapmap];0.82[JPT][hapmap];1.00[MKK][hapmap] |
| rs62215016 | 0.98[ASN][1000 genomes] |
| rs722669 | 0.82[JPT][hapmap] |
| rs7263437 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs7268221 | 0.82[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| WFDC3 | Proximal transcriptional regulation |
| SDC4 | Distal transcriptional regulation |
| WFDC3 | Distal transcriptional regulation |
| DNTTIP1 | Distal transcriptional regulation |
| NCOA5 | Distal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| WFDC10B | Distal transcriptional regulation |
| MIR3617 | Distal transcriptional regulation |
| ENSG00000221046 | Distal transcriptional regulation |
| ZSWIM3 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014