SNP Report
Name | rs6130930   dbSNP |
---|---|
Location | chr:20,44410837 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1045493 | 0.81[JPT][hapmap] |
rs11086984 | 1.00[YRI][hapmap] |
rs11699807 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
rs11906429 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs12624645 | 0.83[ASN][1000 genomes] |
rs12625621 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs1967656 | 0.89[JPT][hapmap] |
rs232259 | 0.91[CEU][hapmap];1.00[YRI][hapmap] |
rs2425748 | 0.92[CEU][hapmap] |
rs2868359 | 0.81[JPT][hapmap] |
rs2868362 | 0.89[JPT][hapmap] |
rs34959201 | 0.88[EUR][1000 genomes] |
rs36051332 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs373018 | 0.88[CEU][hapmap] |
rs3746497 | 0.89[JPT][hapmap] |
rs378710 | 0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
rs383112 | 0.81[ASN][1000 genomes] |
rs454402 | 0.82[CEU][hapmap] |
rs4629 | 0.88[CEU][hapmap] |
rs4638862 | 0.84[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap] |
rs464318 | 0.91[CEU][hapmap] |
rs558554 | 0.83[ASN][1000 genomes] |
rs6032471 | 0.82[CEU][hapmap] |
rs6032533 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6032549 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs6065889 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs6065891 | 0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6073912 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6073913 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6073915 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs6073916 | 0.88[ASN][1000 genomes] |
rs6094224 | 0.89[JPT][hapmap] |
rs6124746 | 0.85[ASN][1000 genomes] |
rs6130946 | 0.82[CHB][hapmap];0.89[JPT][hapmap] |
rs6130954 | 0.81[JPT][hapmap] |
rs6130959 | 0.81[JPT][hapmap] |
rs62215016 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs722669 | 0.89[JPT][hapmap] |
rs7263437 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7268221 | 0.89[JPT][hapmap] |
Symbol | Regulation type |
---|---|
WFDC3 | Proximal transcriptional regulation |
DNTTIP1 | Distal transcriptional regulation |
ENSG00000221046 | Distal transcriptional regulation |
WFDC3 | Distal transcriptional regulation |
ACOT8 | Distal transcriptional regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
ZSWIM1 | Pritchard |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014