SNP Report
Basic Infomation
| Name | rs12625621 dbSNP |
|---|---|
| Location | chr:20,44440350 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 56)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1045493 | 0.82[CHB][hapmap] |
| rs11699807 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs11906429 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12624645 | 0.84[ASN][1000 genomes] |
| rs1386504 | 0.80[CEU][hapmap];0.86[TSI][hapmap] |
| rs1487317 | 0.80[CEU][hapmap];0.89[TSI][hapmap] |
| rs1967656 | 0.82[CHB][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap] |
| rs232259 | 0.92[CEU][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap] |
| rs232262 | 0.88[GIH][hapmap] |
| rs232291 | 0.88[GIH][hapmap] |
| rs2425748 | 0.92[CEU][hapmap] |
| rs2868359 | 0.82[CHB][hapmap] |
| rs2868362 | 0.82[GIH][hapmap];0.82[JPT][hapmap] |
| rs34959201 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs36051332 | 0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs373018 | 0.85[CEU][hapmap];0.93[GIH][hapmap] |
| rs3746497 | 0.82[CHB][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap] |
| rs376206 | 0.80[CEU][hapmap];0.89[TSI][hapmap] |
| rs378710 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.84[ASN][1000 genomes] |
| rs380421 | 0.80[CEU][hapmap];0.89[TSI][hapmap] |
| rs383112 | 0.82[ASN][1000 genomes] |
| rs390386 | 0.80[TSI][hapmap] |
| rs454402 | 0.83[CEU][hapmap] |
| rs459955 | 0.80[CEU][hapmap];0.89[TSI][hapmap] |
| rs462145 | 0.80[CEU][hapmap];0.89[TSI][hapmap] |
| rs4629 | 0.85[CEU][hapmap];0.97[GIH][hapmap] |
| rs4638862 | 0.82[CEU][hapmap];0.87[CHB][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap] |
| rs464318 | 0.92[CEU][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap] |
| rs558554 | 0.84[ASN][1000 genomes] |
| rs6017667 | 0.80[CEU][hapmap];0.89[TSI][hapmap] |
| rs6032449 | 0.85[GIH][hapmap] |
| rs6032471 | 0.82[CEU][hapmap] |
| rs6032474 | 0.80[CEU][hapmap];0.89[TSI][hapmap] |
| rs6032533 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6032541 | 0.80[TSI][hapmap] |
| rs6032545 | 0.82[TSI][hapmap] |
| rs6032549 | 0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6065889 | 0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs6073912 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6073913 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6073915 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6073916 | 0.92[ASN][1000 genomes] |
| rs6094224 | 0.82[CHB][hapmap];0.82[JPT][hapmap] |
| rs6104350 | 0.80[TSI][hapmap] |
| rs6124741 | 0.80[TSI][hapmap] |
| rs6124746 | 0.85[ASN][1000 genomes] |
| rs6130930 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6130946 | 0.87[CHB][hapmap];0.82[JPT][hapmap] |
| rs6130953 | 0.82[CHB][hapmap] |
| rs6130954 | 0.82[CHB][hapmap] |
| rs6130959 | 0.82[CHB][hapmap] |
| rs62215016 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6514066 | 0.82[CHB][hapmap] |
| rs722669 | 0.82[CHB][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap] |
| rs7263437 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7268221 | 0.82[CHB][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| UBE2C | Proximal transcriptional regulation |
| UBE2C | Distal transcriptional regulation |
| CTSA | Distal transcriptional regulation |
| NEURL2 | Distal transcriptional regulation |
| DNTTIP1 | Distal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| ZNF335 | Distal transcriptional regulation |
| TNNC2 | Distal transcriptional regulation |
| SNX21 | Distal transcriptional regulation |
| WFDC3 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014