SNP Report

Basic Infomation

Name	rs6130954 dbSNP
Location	chr:20,44496029
Allele	A/C

LD-proxy of rSNPs(r²>0.8) (count: 53)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1045493	0.81[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11699781	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11699807	0.82[CHB][hapmap]
rs11906429	0.82[CHB][hapmap]
rs11907982	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12625621	0.82[CHB][hapmap]
rs13041788	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1967656	0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.83[JPT][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2007155	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2868359	0.87[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2868360	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2868362	0.95[CHB][hapmap];0.83[JPT][hapmap];0.95[MEX][hapmap]
rs3746497	1.00[CHB][hapmap];0.82[CHD][hapmap];0.83[JPT][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap];0.80[EUR][1000 genomes]
rs3761154	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3761156	0.88[CEU][hapmap];0.81[CHD][hapmap];0.80[TSI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs378710	0.90[CHB][hapmap]
rs4638862	0.95[CHB][hapmap];0.83[JPT][hapmap];0.80[EUR][1000 genomes]
rs4812967	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6032533	0.81[CHB][hapmap]
rs6073912	0.82[CHB][hapmap]
rs6094218	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6094224	1.00[CHB][hapmap];0.82[CHD][hapmap];0.83[JPT][hapmap];0.95[MEX][hapmap]
rs6104372	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6104373	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6104374	0.84[CHB][hapmap]
rs6104375	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6104376	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6104378	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6104379	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6104380	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6104383	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6104384	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6104385	0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6124749	0.81[EUR][1000 genomes]
rs6124751	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6124752	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6130930	0.81[JPT][hapmap]
rs6130946	0.95[CHB][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs6130947	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6130950	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6130951	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6130953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6130955	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6130956	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6130957	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6130958	0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6130959	0.81[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];0.84[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6514065	0.81[CHD][hapmap]
rs6514066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs722669	0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.83[JPT][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7268221	1.00[CHB][hapmap];0.82[CHD][hapmap];0.83[JPT][hapmap];0.95[MEX][hapmap]
rs760558	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8116218	0.88[CEU][hapmap];0.81[CHD][hapmap];0.80[TSI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000221046	Distal transcriptional regulation
WFDC3	Distal transcriptional regulation
ACOT8	Distal transcriptional regulation
ZSWIM3	Distal transcriptional regulation
ZSWIM3	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 5)

eQTL related gene	Source
ZSWIM1	seeQTL
ZSWIM1	Pritchard
ZSWIM1	Pritchard
SNX21	SCAN
CTSA	SCAN