SNP Report
Basic Infomation
| Name | rs6130947 dbSNP |
|---|---|
| Location | chr:20,44483225 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 39)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1045493 | 0.95[CHB][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11907982 | 0.81[ASN][1000 genomes] |
| rs13041788 | 0.82[ASN][1000 genomes] |
| rs1967656 | 0.95[CHB][hapmap];0.95[MEX][hapmap];0.81[ASN][1000 genomes] |
| rs197669 | 0.84[CEU][hapmap] |
| rs2868359 | 0.95[CHB][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2868360 | 0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2868362 | 0.91[CHB][hapmap];0.95[MEX][hapmap] |
| rs3746497 | 0.95[CHB][hapmap];0.95[MEX][hapmap] |
| rs3761154 | 0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs378710 | 0.85[CHB][hapmap] |
| rs3848713 | 0.82[CHB][hapmap] |
| rs4638862 | 0.91[CHB][hapmap] |
| rs6094218 | 0.80[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6094224 | 0.95[CHB][hapmap];0.95[MEX][hapmap] |
| rs6104372 | 0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6104375 | 0.86[ASN][1000 genomes] |
| rs6104376 | 0.90[ASN][1000 genomes] |
| rs6104378 | 0.85[ASN][1000 genomes] |
| rs6104379 | 0.85[ASN][1000 genomes] |
| rs6104383 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6104384 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6104385 | 0.81[CEU][hapmap] |
| rs6124749 | 0.81[ASN][1000 genomes] |
| rs6124751 | 0.83[ASN][1000 genomes] |
| rs6124752 | 0.93[ASN][1000 genomes] |
| rs6130946 | 0.91[CHB][hapmap];0.82[ASN][1000 genomes] |
| rs6130950 | 0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6130951 | 0.93[ASN][1000 genomes] |
| rs6130953 | 0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6130954 | 0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6130955 | 0.81[ASN][1000 genomes] |
| rs6130956 | 0.81[ASN][1000 genomes] |
| rs6130957 | 0.90[ASN][1000 genomes] |
| rs6130958 | 0.90[ASN][1000 genomes] |
| rs6130959 | 0.95[CHB][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.90[ASN][1000 genomes] |
| rs6514066 | 0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs722669 | 0.95[CHB][hapmap];0.95[MEX][hapmap];0.81[ASN][1000 genomes] |
| rs7268221 | 0.95[CHB][hapmap];0.95[MEX][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZSWIM3 | Proximal transcriptional regulation |
| ACOT8 | Distal transcriptional regulation |
| ZSWIM3 | Distal transcriptional regulation |
| ACOT8 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014