SNP Report
Basic Infomation
| Name | rs6032541 dbSNP |
|---|---|
| Location | chr:20,44420280 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 61)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12625621 | 0.80[TSI][hapmap] |
| rs13037551 | 0.84[ASN][1000 genomes] |
| rs1386504 | 0.84[CEU][hapmap] |
| rs1386505 | 0.81[CEU][hapmap] |
| rs1487317 | 0.84[CEU][hapmap] |
| rs2064504 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.88[CHD][hapmap];0.80[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs232286 | 0.81[CEU][hapmap];0.84[GIH][hapmap] |
| rs2664529 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.80[MEX][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes] |
| rs2664539 | 0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2868349 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs370237 | 0.82[CHB][hapmap];0.86[CHD][hapmap] |
| rs373018 | 0.91[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap] |
| rs3746493 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.80[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs3746494 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.80[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs376206 | 0.84[CEU][hapmap] |
| rs380397 | 0.82[CHB][hapmap];0.86[CHD][hapmap] |
| rs380421 | 0.84[CEU][hapmap] |
| rs3848711 | 0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.85[ASN][1000 genomes] |
| rs386155 | 0.82[CHB][hapmap];0.86[CHD][hapmap] |
| rs390386 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs399672 | 0.82[CHB][hapmap];0.88[CHD][hapmap] |
| rs411945 | 0.87[CEU][hapmap];0.82[CHB][hapmap] |
| rs426384 | 0.83[CEU][hapmap];0.86[CHD][hapmap] |
| rs437122 | 0.82[CHB][hapmap];0.86[CHD][hapmap] |
| rs445503 | 0.85[ASN][1000 genomes] |
| rs454402 | 0.83[CEU][hapmap] |
| rs456212 | 0.83[CEU][hapmap] |
| rs459955 | 0.84[CEU][hapmap] |
| rs462145 | 0.84[CEU][hapmap] |
| rs4625980 | 0.94[EUR][1000 genomes] |
| rs4629 | 0.91[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs567348 | 0.82[CHB][hapmap];0.91[CHD][hapmap] |
| rs6017653 | 0.83[GIH][hapmap] |
| rs6017667 | 0.84[CEU][hapmap] |
| rs6032471 | 0.82[CEU][hapmap] |
| rs6032473 | 0.91[CEU][hapmap] |
| rs6032474 | 0.84[CEU][hapmap] |
| rs6032530 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.80[MEX][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes] |
| rs6032531 | 1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6032532 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6032534 | 0.81[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6032535 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6032536 | 0.85[CEU][hapmap];0.84[CHB][hapmap] |
| rs6032537 | 0.82[CHB][hapmap];0.91[CHD][hapmap] |
| rs6032538 | 0.82[CHB][hapmap] |
| rs6032544 | 0.95[CEU][hapmap];0.81[CHB][hapmap];0.83[CHD][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6032545 | 0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6032548 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6065886 | 0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6065893 | 0.81[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6073905 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.80[MEX][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes] |
| rs6073906 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs6073910 | 0.82[CHB][hapmap] |
| rs6104350 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6104355 | 0.91[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.85[LWK][hapmap];0.85[ASN][1000 genomes] |
| rs6124741 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6124742 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[EUR][1000 genomes] |
| rs6130929 | 0.93[ASN][1000 genomes] |
| rs7263437 | 0.80[TSI][hapmap] |
| rs811657 | 0.84[ASN][1000 genomes] |
| rs910396 | 0.90[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DNTTIP1 | Proximal transcriptional regulation |
| WFDC3 | Proximal transcriptional regulation |
| ENSG00000221046 | Distal transcriptional regulation |
| PLTP | Distal transcriptional regulation |
| SLC12A5 | Distal transcriptional regulation |
| ENSG00000204044 | Distal transcriptional regulation |
| ENSG00000240742 | Distal transcriptional regulation |
| WFDC3 | Distal transcriptional regulation |
| TNNC2 | Distal transcriptional regulation |
| SNX21 | Distal transcriptional regulation |
| ZNF335 | Distal transcriptional regulation |
| NCOA5 | Distal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| UBE2C | Distal transcriptional regulation |
| NEURL2 | Distal transcriptional regulation |
| CTSA | Distal transcriptional regulation |
| DNTTIP1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 11)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014