SNP Report
Name | rs6032541   dbSNP |
---|---|
Location | chr:20,44420280 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs12625621 | 0.80[TSI][hapmap] |
rs13037551 | 0.84[ASN][1000 genomes] |
rs1386504 | 0.84[CEU][hapmap] |
rs1386505 | 0.81[CEU][hapmap] |
rs1487317 | 0.84[CEU][hapmap] |
rs2064504 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.88[CHD][hapmap];0.80[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs232286 | 0.81[CEU][hapmap];0.84[GIH][hapmap] |
rs2664529 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.80[MEX][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes] |
rs2664539 | 0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2868349 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs370237 | 0.82[CHB][hapmap];0.86[CHD][hapmap] |
rs373018 | 0.91[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap] |
rs3746493 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.80[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs3746494 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.80[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs376206 | 0.84[CEU][hapmap] |
rs380397 | 0.82[CHB][hapmap];0.86[CHD][hapmap] |
rs380421 | 0.84[CEU][hapmap] |
rs3848711 | 0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.85[ASN][1000 genomes] |
rs386155 | 0.82[CHB][hapmap];0.86[CHD][hapmap] |
rs390386 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs399672 | 0.82[CHB][hapmap];0.88[CHD][hapmap] |
rs411945 | 0.87[CEU][hapmap];0.82[CHB][hapmap] |
rs426384 | 0.83[CEU][hapmap];0.86[CHD][hapmap] |
rs437122 | 0.82[CHB][hapmap];0.86[CHD][hapmap] |
rs445503 | 0.85[ASN][1000 genomes] |
rs454402 | 0.83[CEU][hapmap] |
rs456212 | 0.83[CEU][hapmap] |
rs459955 | 0.84[CEU][hapmap] |
rs462145 | 0.84[CEU][hapmap] |
rs4625980 | 0.94[EUR][1000 genomes] |
rs4629 | 0.91[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes] |
rs567348 | 0.82[CHB][hapmap];0.91[CHD][hapmap] |
rs6017653 | 0.83[GIH][hapmap] |
rs6017667 | 0.84[CEU][hapmap] |
rs6032471 | 0.82[CEU][hapmap] |
rs6032473 | 0.91[CEU][hapmap] |
rs6032474 | 0.84[CEU][hapmap] |
rs6032530 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.80[MEX][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes] |
rs6032531 | 1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6032532 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6032534 | 0.81[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6032535 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6032536 | 0.85[CEU][hapmap];0.84[CHB][hapmap] |
rs6032537 | 0.82[CHB][hapmap];0.91[CHD][hapmap] |
rs6032538 | 0.82[CHB][hapmap] |
rs6032544 | 0.95[CEU][hapmap];0.81[CHB][hapmap];0.83[CHD][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6032545 | 0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6032548 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6065886 | 0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6065893 | 0.81[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6073905 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.80[MEX][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes] |
rs6073906 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs6073910 | 0.82[CHB][hapmap] |
rs6104350 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6104355 | 0.91[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.85[LWK][hapmap];0.85[ASN][1000 genomes] |
rs6124741 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6124742 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[EUR][1000 genomes] |
rs6130929 | 0.93[ASN][1000 genomes] |
rs7263437 | 0.80[TSI][hapmap] |
rs811657 | 0.84[ASN][1000 genomes] |
rs910396 | 0.90[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
DNTTIP1 | Proximal transcriptional regulation |
WFDC3 | Proximal transcriptional regulation |
ENSG00000221046 | Distal transcriptional regulation |
PLTP | Distal transcriptional regulation |
SLC12A5 | Distal transcriptional regulation |
ENSG00000204044 | Distal transcriptional regulation |
ENSG00000240742 | Distal transcriptional regulation |
WFDC3 | Distal transcriptional regulation |
TNNC2 | Distal transcriptional regulation |
SNX21 | Distal transcriptional regulation |
ZNF335 | Distal transcriptional regulation |
NCOA5 | Distal transcriptional regulation |
PCIF1 | Distal transcriptional regulation |
UBE2C | Distal transcriptional regulation |
NEURL2 | Distal transcriptional regulation |
CTSA | Distal transcriptional regulation |
DNTTIP1 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014