SNP Report
Name | rs6032531   dbSNP |
---|---|
Location | chr:20,44412567 |
Allele | C/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs13037551 | 0.85[ASN][1000 genomes] |
rs1386504 | 0.82[CEU][hapmap] |
rs1487317 | 0.82[CEU][hapmap] |
rs2064504 | 1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs2664529 | 1.00[CEU][hapmap];0.94[EUR][1000 genomes] |
rs2664539 | 0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2868349 | 0.82[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs373018 | 0.90[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes] |
rs3746493 | 1.00[CEU][hapmap];0.98[EUR][1000 genomes] |
rs3746494 | 1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs376206 | 0.82[CEU][hapmap] |
rs380421 | 0.82[CEU][hapmap] |
rs3848711 | 0.90[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.85[ASN][1000 genomes] |
rs390386 | 1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs411945 | 0.86[CEU][hapmap] |
rs426384 | 0.81[CEU][hapmap] |
rs445503 | 0.85[ASN][1000 genomes] |
rs454402 | 0.81[CEU][hapmap] |
rs456212 | 0.83[CEU][hapmap] |
rs459955 | 0.82[CEU][hapmap] |
rs462145 | 0.82[CEU][hapmap] |
rs4625980 | 0.94[EUR][1000 genomes] |
rs4629 | 0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes] |
rs6017667 | 0.82[CEU][hapmap] |
rs6032471 | 0.81[CEU][hapmap] |
rs6032473 | 0.91[CEU][hapmap] |
rs6032474 | 0.82[CEU][hapmap] |
rs6032530 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes] |
rs6032532 | 1.00[CEU][hapmap];0.98[EUR][1000 genomes] |
rs6032534 | 0.98[EUR][1000 genomes] |
rs6032535 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6032536 | 0.84[CEU][hapmap] |
rs6032541 | 1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6032544 | 0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6032545 | 1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6032548 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs6065886 | 0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6065893 | 0.98[EUR][1000 genomes] |
rs6073905 | 1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs6073906 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs6104350 | 1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6104355 | 0.90[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes] |
rs6124741 | 1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6124742 | 1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs6130929 | 0.93[ASN][1000 genomes] |
rs811657 | 0.85[ASN][1000 genomes] |
rs910396 | 0.90[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
WFDC3 | Proximal transcriptional regulation |
FTLP1 | Distal transcriptional regulation |
PCIF1 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014