SNP Report

Basic Infomation

Name	rs6032531 dbSNP
Location	chr:20,44412567
Allele	C/A

LD-proxy of rSNPs(r²>0.8) (count: 47)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs13037551	0.85[ASN][1000 genomes]
rs1386504	0.82[CEU][hapmap]
rs1487317	0.82[CEU][hapmap]
rs2064504	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2664529	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2664539	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2868349	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs373018	0.90[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs3746493	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs3746494	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs376206	0.82[CEU][hapmap]
rs380421	0.82[CEU][hapmap]
rs3848711	0.90[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs390386	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs411945	0.86[CEU][hapmap]
rs426384	0.81[CEU][hapmap]
rs445503	0.85[ASN][1000 genomes]
rs454402	0.81[CEU][hapmap]
rs456212	0.83[CEU][hapmap]
rs459955	0.82[CEU][hapmap]
rs462145	0.82[CEU][hapmap]
rs4625980	0.94[EUR][1000 genomes]
rs4629	0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs6017667	0.82[CEU][hapmap]
rs6032471	0.81[CEU][hapmap]
rs6032473	0.91[CEU][hapmap]
rs6032474	0.82[CEU][hapmap]
rs6032530	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs6032532	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs6032534	0.98[EUR][1000 genomes]
rs6032535	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6032536	0.84[CEU][hapmap]
rs6032541	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6032544	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6032545	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6032548	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6065886	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6065893	0.98[EUR][1000 genomes]
rs6073905	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6073906	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6104350	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6104355	0.90[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs6124741	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6124742	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6130929	0.93[ASN][1000 genomes]
rs811657	0.85[ASN][1000 genomes]
rs910396	0.90[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
WFDC3	Proximal transcriptional regulation
FTLP1	Distal transcriptional regulation
PCIF1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)