SNP Report

Basic Infomation

Name	rs6073906 dbSNP
Location	chr:20,44402271
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 51)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs2064504	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2077004	0.96[ASN][1000 genomes]
rs2138546	0.87[ASN][1000 genomes]
rs2664529	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2664539	0.91[EUR][1000 genomes]
rs2664591	0.98[ASN][1000 genomes]
rs2742654	0.83[ASN][1000 genomes]
rs2868349	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs368622	0.96[ASN][1000 genomes]
rs370237	0.84[ASN][1000 genomes]
rs3746493	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3746494	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs377770	1.00[ASN][1000 genomes]
rs379059	0.86[ASN][1000 genomes]
rs380397	0.82[ASN][1000 genomes]
rs380973	0.82[ASN][1000 genomes]
rs386155	0.83[ASN][1000 genomes]
rs390386	0.88[EUR][1000 genomes]
rs399672	0.96[ASN][1000 genomes]
rs411945	0.98[ASN][1000 genomes]
rs426384	0.86[ASN][1000 genomes]
rs4337538	0.84[ASN][1000 genomes]
rs437122	0.84[ASN][1000 genomes]
rs4625980	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs567348	0.98[ASN][1000 genomes]
rs6017692	0.98[ASN][1000 genomes]
rs6032524	1.00[ASN][1000 genomes]
rs6032530	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6032531	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6032532	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6032534	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6032535	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6032536	0.98[ASN][1000 genomes]
rs6032537	0.98[ASN][1000 genomes]
rs6032538	0.98[ASN][1000 genomes]
rs6032541	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6032544	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6032545	0.93[EUR][1000 genomes]
rs6032548	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6065886	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6065892	0.84[ASN][1000 genomes]
rs6065893	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6073905	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6073910	0.98[ASN][1000 genomes]
rs6104345	0.83[ASN][1000 genomes]
rs6104349	0.85[AFR][1000 genomes]
rs6104350	0.93[EUR][1000 genomes]
rs6124741	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6124742	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8116061	0.83[ASN][1000 genomes]
rs8860	0.82[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
WFDC13	Distal transcriptional regulation
ENSG00000221046	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)